Detailed information NTG0901722

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABH608_RS04900
• Genome accession: NZ_CP157088
• Coordinates: 1016205..1017197 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli isolate FELIX_MS490
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1011205..1022197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABH608_RS04870 (ABH608_04870)	ispD	1011266..1011976 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABH608_RS04875 (ABH608_04875)	ispF	1011976..1012455 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABH608_RS04880 (ABH608_04880)	truD	1012452..1013501 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABH608_RS04885 (ABH608_04885)	surE	1013482..1014243 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABH608_RS04890 (ABH608_04890)	pcm	1014237..1014863 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABH608_RS04895 (ABH608_04895)	nlpD	1015048..1016142 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABH608_RS04900 (ABH608_04900)	rpoS	1016205..1017197 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ABH608_RS04905 (ABH608_04905)	ygbN	1017291..1018655 (-)	1365	WP_000104441.1	GntP family transporter	-
ABH608_RS04910 (ABH608_04910)	ygbM	1018744..1019520 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABH608_RS04915 (ABH608_04915)	ygbL	1019525..1020163 (-)	639	WP_001278994.1	aldolase	-
ABH608_RS04920 (ABH608_04920)	otnK	1020255..1021421 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=901722 ABH608_RS04900 WP_000081588.1 1016205..1017197(+) (rpoS) [Escherichia coli isolate FELIX_MS490]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=901722 ABH608_RS04900 WP_000081588.1 1016205..1017197(+) (rpoS) [Escherichia coli isolate FELIX_MS490]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715