Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   TthTMY_RS03770 Genome accession   NZ_AP025158
Coordinates   676711..676887 (-) Length   58 a.a.
NCBI ID   WP_223903428.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671711..681887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS03740 (TthTMY_07360) - 671854..672216 (-) 363 WP_096412593.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TthTMY_RS03745 (TthTMY_07370) - 672403..673500 (-) 1098 WP_096410480.1 IS4 family transposase -
  TthTMY_RS03750 (TthTMY_07380) - 673658..675160 (-) 1503 WP_096412596.1 pilus assembly PilX family protein -
  TthTMY_RS03755 (TthTMY_07390) - 675174..675884 (-) 711 WP_096412599.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TthTMY_RS03760 (TthTMY_07400) - 675881..676207 (-) 327 WP_223903427.1 type IV pilus modification PilV family protein -
  TthTMY_RS03765 (TthTMY_07410) - 676239..676706 (-) 468 WP_096412604.1 GspH/FimT family protein -
  TthTMY_RS03770 (TthTMY_07420) pilA/pilA1 676711..676887 (-) 177 WP_223903428.1 hypothetical protein Machinery gene
  TthTMY_RS03775 (TthTMY_07430) - 677013..677993 (+) 981 WP_096412608.1 YpdA family putative bacillithiol disulfide reductase -
  TthTMY_RS03780 (TthTMY_07440) ilvB 678148..679836 (+) 1689 WP_096412610.1 biosynthetic-type acetolactate synthase large subunit -
  TthTMY_RS03785 (TthTMY_07450) ilvN 679833..680345 (+) 513 WP_096412614.1 acetolactate synthase small subunit -
  TthTMY_RS03790 (TthTMY_07460) ilvC 680342..681355 (+) 1014 WP_096412617.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6240.39 Da        Isoelectric Point: 12.5124

>NTDB_id=90169 TthTMY_RS03770 WP_223903428.1 676711..676887(-) (pilA/pilA1) [Thermus thermophilus strain TMY]
MPLLFDPRGIPAKPITATLVLTSGDATRKVAISQQGRARLERPSIRGMSTRGRAPKVV

Nucleotide


Download         Length: 177 bp        

>NTDB_id=90169 TthTMY_RS03770 WP_223903428.1 676711..676887(-) (pilA/pilA1) [Thermus thermophilus strain TMY]
ATGCCCCTCCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACCCTCGTCCTCACCTCAGGGGACGCCAC
CCGCAAGGTGGCCATCTCCCAACAGGGCCGGGCCCGCCTGGAGCGACCCTCCATTCGGGGGATGAGCACCCGAGGGCGAG
CTCCTAAAGTGGTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

95.122

70.69

0.672

Multiple sequence alignment