Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LDO36_RS24920 Genome accession   NZ_AP025156
Coordinates   1364437..1365534 (-) Length   365 a.a.
NCBI ID   WP_126607006.1    Uniprot ID   A0AAV5NR65
Organism   Vibrio penaeicida strain TUMSAT-OK2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359437..1370534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO36_RS24905 - 1359512..1360771 (+) 1260 WP_126609371.1 hydroxymethylglutaryl-CoA reductase -
  LDO36_RS24910 - 1360938..1361585 (-) 648 WP_126609372.1 hypothetical protein -
  LDO36_RS24915 - 1361812..1364418 (-) 2607 WP_224055471.1 LuxQ periplasmic sensor domain-containing protein -
  LDO36_RS24920 luxP 1364437..1365534 (-) 1098 WP_126607006.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LDO36_RS24925 - 1365700..1366332 (-) 633 WP_126607007.1 response regulator -
  LDO36_RS24930 narQ 1366319..1368037 (-) 1719 WP_224055472.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  LDO36_RS24935 napF 1368296..1368787 (+) 492 WP_126607009.1 ferredoxin-type protein NapF -
  LDO36_RS24940 - 1368790..1369095 (+) 306 WP_126607010.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 40887.15 Da        Isoelectric Point: 6.7664

>NTDB_id=90155 LDO36_RS24920 WP_126607006.1 1364437..1365534(-) (luxP) [Vibrio penaeicida strain TUMSAT-OK2]
MKLQHLLVGTLSLALTSGLNAAQALNGYWEYSDFLKTFPEQQGLVRSFSEVVRSEPTPLAVRQTKPVTISVIYPGEQVSD
YWRRNITAFSKRMDELGIDYQINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWSQNQPFMYVGFDHATGSRALASHFKSRFPRGGDYSVLFFSQGYISAARGDTFIEAMSNEGEAYQLRSSFYTKA
SRQSGYEAAKNALSQGHNLSFIYTCSTDVALGATDAIKELGRKDIVINGWGGGSAELEAIQKGELNVTIMRMNDDTGVAM
AEAIKMDLEDKPVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=90155 LDO36_RS24920 WP_126607006.1 1364437..1365534(-) (luxP) [Vibrio penaeicida strain TUMSAT-OK2]
ATGAAATTGCAACATCTTTTGGTTGGCACCTTAAGTTTGGCTCTAACATCCGGCTTAAATGCAGCACAAGCTCTCAATGG
CTATTGGGAATACAGTGATTTTCTAAAAACATTTCCTGAACAGCAGGGGCTCGTGAGGAGTTTTAGTGAGGTTGTTCGCT
CTGAGCCAACACCCTTAGCAGTAAGGCAAACGAAACCAGTAACGATTTCCGTTATCTATCCTGGCGAACAAGTCTCAGAT
TATTGGCGACGTAACATCACTGCGTTTAGTAAACGTATGGATGAATTGGGCATTGATTACCAAATTAACAAAGTATTCAC
GCGGCCTAATGTCGACATTAGGCAACAAAGTGCTTCGTTGATGGAGGCAATACGCAACAAATCCGGTTATTTGATCTTTA
CACTTGATACCGGTCGTCACCGAAAATTCATTGAGCACGTTCTAAACAGCCCAGATACAAAACTCATACTTCAAAACATT
ACCACTCCACTTAAAGCATGGTCTCAGAACCAGCCATTCATGTATGTTGGGTTTGACCACGCAACAGGTAGCCGTGCACT
CGCAAGCCATTTTAAATCCCGTTTTCCTCGCGGTGGCGACTACTCTGTACTTTTCTTTTCGCAAGGTTACATAAGTGCCG
CGCGCGGCGATACATTTATTGAAGCGATGAGTAACGAGGGTGAGGCGTACCAATTACGTTCGTCATTTTACACAAAAGCG
AGTCGTCAAAGCGGATACGAAGCGGCGAAAAACGCGCTTAGTCAAGGTCACAACTTATCCTTTATCTATACGTGCTCTAC
CGATGTTGCGTTGGGGGCAACTGACGCAATTAAAGAGCTGGGTCGCAAAGATATAGTAATTAACGGCTGGGGTGGTGGAA
GTGCAGAGCTTGAAGCGATACAAAAAGGTGAATTGAATGTTACCATTATGAGAATGAACGATGATACTGGTGTTGCGATG
GCGGAAGCCATTAAAATGGACCTAGAGGATAAACCTGTCCCAACCGTTTATTCCGGAGATTTTGAGATAGTAACCAGTCA
AGACAGTGAAGAAAGAATACAAGAATTAAAGCTTCGTGCTTTCAGATATTCTGACTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.789

97.26

0.63

Multiple sequence alignment