Detailed information NTG0901519

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABH623_RS06825
• Genome accession: NZ_CP157086
• Coordinates: 1456230..1457234 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAO1DF
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451230..1462234

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABH623_RS06795 (ABH623_06795)	fghA	1451322..1452173 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ABH623_RS06800 (ABH623_06800)	ispF	1452244..1452717 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABH623_RS06805 (ABH623_06805)	truD	1452714..1453781 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
ABH623_RS06810 (ABH623_06810)	surE	1453769..1454518 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABH623_RS06815 (ABH623_06815)	-	1454551..1455186 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABH623_RS06820 (ABH623_06820)	-	1455232..1456125 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABH623_RS06825 (ABH623_06825)	rpoS	1456230..1457234 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABH623_RS06830 (ABH623_06830)	fdxA	1457661..1457984 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ABH623_RS06835 (ABH623_06835)	mutS	1458051..1460618 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ABH623_RS06840 (ABH623_06840)	-	1460744..1461751 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=901519 ABH623_RS06825 WP_003113871.1 1456230..1457234(+) (rpoS) [Pseudomonas aeruginosa strain PAO1DF]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=901519 ABH623_RS06825 WP_003113871.1 1456230..1457234(+) (rpoS) [Pseudomonas aeruginosa strain PAO1DF]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653