Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SC318_RS25025 Genome accession   NZ_CP138214
Coordinates   5536442..5536849 (-) Length   135 a.a.
NCBI ID   WP_124388588.1    Uniprot ID   -
Organism   Pseudomonas sp. MUP55     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5531442..5541849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC318_RS25010 (SC318_25010) - 5533445..5535496 (-) 2052 WP_306490718.1 methyl-accepting chemotaxis protein -
  SC318_RS25015 (SC318_25015) - 5535493..5536017 (-) 525 WP_124388587.1 chemotaxis protein CheW -
  SC318_RS25020 (SC318_25020) pilH 5536030..5536395 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  SC318_RS25025 (SC318_25025) pilG 5536442..5536849 (-) 408 WP_124388588.1 twitching motility response regulator PilG Regulator
  SC318_RS25030 (SC318_25030) gshB 5537089..5538060 (+) 972 WP_320428853.1 glutathione synthase -
  SC318_RS25035 (SC318_25035) - 5538177..5539082 (+) 906 WP_306490721.1 energy transducer TonB -
  SC318_RS25040 (SC318_25040) - 5539234..5539803 (+) 570 WP_320428854.1 YqgE/AlgH family protein -
  SC318_RS25045 (SC318_25045) ruvX 5539803..5540240 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  SC318_RS25050 (SC318_25050) pyrR 5540373..5540879 (+) 507 WP_320428855.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14996.54 Da        Isoelectric Point: 7.3843

>NTDB_id=901471 SC318_RS25025 WP_124388588.1 5536442..5536849(-) (pilG) [Pseudomonas sp. MUP55]
MEQHSNALRVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=901471 SC318_RS25025 WP_124388588.1 5536442..5536849(-) (pilG) [Pseudomonas sp. MUP55]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGACTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGAATCGTGGACCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCTATGTGCCTGCCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.079

94.074

0.659