Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SC192_RS17095 Genome accession   NZ_CP138205
Coordinates   3591607..3591933 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter sp. 2019-01-05     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3586607..3596933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS17075 (SC192_17085) - 3586707..3587333 (-) 627 WP_348896990.1 FHA domain-containing protein -
  SC192_RS17080 (SC192_17090) gspD 3587374..3589650 (-) 2277 WP_348896989.1 type II secretion system secretin GspD -
  SC192_RS17085 (SC192_17095) - 3589692..3590531 (-) 840 WP_348896988.1 type II secretion system protein N -
  SC192_RS17090 (SC192_17100) gspN 3590531..3591274 (-) 744 WP_348896987.1 type II secretion system protein N -
  SC192_RS17095 (SC192_17105) hns 3591607..3591933 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  SC192_RS17100 (SC192_17110) - 3592128..3592568 (-) 441 WP_348896986.1 acyl-CoA thioesterase -
  SC192_RS17105 (SC192_17115) - 3592576..3593769 (-) 1194 WP_348896985.1 heme biosynthesis protein HemY -
  SC192_RS17110 (SC192_17120) - 3593779..3594618 (-) 840 WP_348896984.1 hypothetical protein -
  SC192_RS17115 (SC192_17125) - 3594627..3595394 (-) 768 WP_348896983.1 uroporphyrinogen-III synthase -
  SC192_RS17120 (SC192_17130) hemC 3595399..3596316 (-) 918 WP_348896994.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=901416 SC192_RS17095 WP_002053185.1 3591607..3591933(-) (hns) [Acinetobacter sp. 2019-01-05]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=901416 SC192_RS17095 WP_002053185.1 3591607..3591933(-) (hns) [Acinetobacter sp. 2019-01-05]
ATGAAACCAGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGCGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGCAAGAAAACTACACGTAAATCTGTAGAGCCTCGCTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991