Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SC192_RS16565 Genome accession   NZ_CP138205
Coordinates   3474761..3476989 (+) Length   742 a.a.
NCBI ID   WP_348896251.1    Uniprot ID   A0AB39JYE7
Organism   Acinetobacter sp. 2019-01-05     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3469761..3481989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS16540 (SC192_16545) - 3471301..3471639 (-) 339 WP_348896245.1 tRNA-binding protein -
  SC192_RS16545 (SC192_16550) - 3471870..3472130 (+) 261 WP_348896246.1 DUF2798 domain-containing protein -
  SC192_RS16550 (SC192_16555) - 3472191..3472535 (-) 345 WP_348896248.1 hypothetical protein -
  SC192_RS16555 (SC192_16560) gspG 3472799..3473383 (-) 585 WP_348896306.1 type II secretion system major pseudopilin GspG -
  SC192_RS16560 (SC192_16565) gspF 3473407..3474612 (-) 1206 WP_348896250.1 type II secretion system inner membrane protein GspF -
  SC192_RS16565 (SC192_16570) priA 3474761..3476989 (+) 2229 WP_348896251.1 primosomal protein N' Machinery gene
  SC192_RS16570 (SC192_16575) - 3477065..3478906 (+) 1842 WP_348896252.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  SC192_RS16575 (SC192_16580) - 3479072..3479947 (+) 876 WP_069370680.1 Hsp33 family molecular chaperone HslO -
  SC192_RS16580 (SC192_16585) - 3480084..3480695 (+) 612 WP_309456567.1 LysE family translocator -
  SC192_RS16585 (SC192_16590) - 3480846..3481802 (+) 957 WP_348896253.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83963.82 Da        Isoelectric Point: 8.5653

>NTDB_id=901412 SC192_RS16565 WP_348896251.1 3474761..3476989(+) (priA) [Acinetobacter sp. 2019-01-05]
MTITPKPDSIVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=901412 SC192_RS16565 WP_348896251.1 3474761..3476989(+) (priA) [Acinetobacter sp. 2019-01-05]
ATGACCATAACGCCAAAACCTGATTCTATTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGAGCTCAGGTAGGTTCACGCGTCGCTATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTCATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATTTATGGAAAATCATTC
CTTGTGACAATGTAGAAGCCCTGTTAAAGCGTTCCATTAAGCAACAAGATGCTTATCAGATTTTAAAATTGCATCCTGCG
GGCACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCGCTGCAAAAGAAAGGACTCATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACGCTAAATGATGATCAGA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCATGAAGTATTAAAGCAAGGTAAGCAAGTACTAGTACTAGTACCTGAAATTGGTTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCGGGCTTAAATGACTCTA
AACGCCTCCAAGCATGGCAACAGGCACAAACTGGTAAAGCCTCTATTATTTTAGGCACTCGTTCAGCCATTTATACACCG
CTGCCACGTTTGGGCCTCATCATTTTAGATGAAGAACATGATCTGTCTTATAAACAGCAGGAAGGCTTCCGTTATCATGC
ACGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTGGGTTCAGCGACTCCAAGCATCGACAGCT
ATCACTTGGTGGAAACTGGTAAGTTAACTTCACTGCAACTTAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATCGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATTGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGACGCGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGCCCACATTGTGATGCGCATTTTACGTTGCATACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCCTACCCGATCACTGTCCTGAGTGTCAGCAAAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCCAAAGTTGAAGA
ACACTTACAAGAATTATTCCCGGATCATGATGTGATTCGGGTCGATCGTGACAGTACAAGTCGTGTGGGCAGTTGGCAAA
AAATTTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCG
CATGTGACTTTAGTTGCTATTTTAGATATTGATGCAGGTTTACTGAGTGTTGATATTCGAGCACCTGAGCGTACTGCTCA
ACTCATTGTACAAGTGGCTGGCCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTGCAAACTTTAAGACCCGATC
ACCCTTTACTCACCACACTCATTGAAAAAGATTATCGGGCTGTTGCCAAACAAACGTTGGCTGAACGTAAAGTTGCATTG
CTTCCGCCGTATCGCTATGCCGTACTTATACGTGCTGAGTCAAAAGATCGTGACTATACCTTACAATTTTTAAATGAAGC
TGCCGAGCAACTACGTCAAATTGCAGGTGATATTGTTGATATCTGGGGACCGATTCCAGCGCCAATGGAACGTAAAGCTG
GACGCTACCGTGCCCACATGGTGATTTTATCTGCCGACCGTGCTCGTCTACATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTCCATGCACCAAGACAACATCAACTTAGACTATCAATTGATGTTGACCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.17

100

0.972