Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SC192_RS02365 Genome accession   NZ_CP138205
Coordinates   482458..483342 (+) Length   294 a.a.
NCBI ID   WP_348898393.1    Uniprot ID   A0AB39JY05
Organism   Acinetobacter sp. 2019-01-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477458..488342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS02340 (SC192_02345) - 477850..479097 (-) 1248 WP_348898398.1 YihY family inner membrane protein -
  SC192_RS02345 (SC192_02350) wrbA 479378..479980 (+) 603 WP_348898397.1 NAD(P)H:quinone oxidoreductase -
  SC192_RS02350 (SC192_02355) - 480033..480608 (-) 576 WP_348898396.1 xanthine phosphoribosyltransferase -
  SC192_RS02355 (SC192_02360) - 480681..481394 (-) 714 WP_348898395.1 DUF3108 domain-containing protein -
  SC192_RS02360 (SC192_02365) - 481552..482223 (-) 672 WP_348898394.1 hypothetical protein -
  SC192_RS02365 (SC192_02370) tonB2 482458..483342 (+) 885 WP_348898393.1 energy transducer TonB Machinery gene
  SC192_RS02370 (SC192_02375) ybeY 483430..483906 (-) 477 WP_348898392.1 rRNA maturation RNase YbeY -
  SC192_RS02375 (SC192_02380) - 483916..485004 (-) 1089 WP_348898391.1 PhoH family protein -
  SC192_RS02380 (SC192_02385) miaB 485042..486493 (-) 1452 WP_348898390.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33629.56 Da        Isoelectric Point: 8.3587

>NTDB_id=901393 SC192_RS02365 WP_348898393.1 482458..483342(+) (tonB2) [Acinetobacter sp. 2019-01-05]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHILVLLIHFAMPAPSEQSTKEIAVSIRPAEEAVKNADFLAQADQQGAGV
FREAHRMSSNAQTPMPNDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESKRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGHFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=901393 SC192_RS02365 WP_348898393.1 482458..483342(+) (tonB2) [Acinetobacter sp. 2019-01-05]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGTGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTGGTATTGCTCATTCACTTTGCGATGCCTGCACCGTCTGAACAATCAACCAAAGAAATTG
CTGTATCTATTCGTCCTGCTGAGGAAGCAGTCAAAAATGCCGATTTTTTAGCTCAAGCAGACCAACAAGGTGCTGGGGTC
TTTCGAGAAGCTCATCGGATGTCTAGTAATGCTCAAACGCCTATGCCTAACGATGCTTCGACTGGAGAAGCGCAGTTAGA
AACCTTAGAAAAAGTACAACAACAAAGAGAACTTAAGTTCGAAGAAAAAGTATTGATGACAGTGTTAAGTTGGCAGAAAC
AAGCAGAGGAGAGCAAAAGAAAAAAAGAGCTTGAGCAATTACAAAGTCAGTTTCAGGCAAAAGCTGCAATGGTCGCAAGT
CTCGAGGCTCAATATTTACAACGTCAGCAAGATTTTAGCCGTCAGCAAAAAATAAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCATCAGCGGCGTATTTAGATAAGTTCCGTGAGAAAGTGGAACTTTACGGTAATCGTTATTATCCCGAAGAGG
CTAAACTGCAGCAGTTAAAAGGTGAAGTTCGCCTTATGGTTATCTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGGCATCCGGTTTTAGATGAAGCCGCAAAAGCATCGGTACGCCGTGGTGCTCCATTTGGTCATTTTGA
TGTCAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACTTGGCGATTTGATCCAGCTGAAGCTGAATTTGAAGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

93.878

100

0.939