Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SC192_RS01515 Genome accession   NZ_CP138205
Coordinates   321466..322107 (+) Length   213 a.a.
NCBI ID   WP_348895805.1    Uniprot ID   -
Organism   Acinetobacter sp. 2019-01-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316466..327107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS01495 (SC192_01495) - 316513..316845 (+) 333 WP_348895809.1 hypothetical protein -
  SC192_RS01500 (SC192_01500) - 316846..317670 (+) 825 WP_348895808.1 putative RNA methyltransferase -
  SC192_RS01505 (SC192_01505) ponA 317688..320246 (-) 2559 WP_348895807.1 penicillin-binding protein PBP1a -
  SC192_RS01510 (SC192_01510) pilM 320408..321466 (+) 1059 WP_348895806.1 pilus assembly protein PilM Machinery gene
  SC192_RS01515 (SC192_01515) pilN 321466..322107 (+) 642 WP_348895805.1 PilN domain-containing protein Machinery gene
  SC192_RS01520 (SC192_01520) pilO 322104..322844 (+) 741 WP_348895804.1 type 4a pilus biogenesis protein PilO Machinery gene
  SC192_RS01525 (SC192_01525) pilP 322855..323382 (+) 528 WP_348895866.1 pilus assembly protein PilP Machinery gene
  SC192_RS01530 (SC192_01530) pilQ 323445..325571 (+) 2127 WP_348895803.1 type IV pilus secretin PilQ family protein Machinery gene
  SC192_RS01535 (SC192_01535) aroK 325583..326152 (+) 570 WP_348895802.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.35 Da        Isoelectric Point: 6.0051

>NTDB_id=901386 SC192_RS01515 WP_348895805.1 321466..322107(+) (pilN) [Acinetobacter sp. 2019-01-05]
MATINLLPWREALREQRKKQFITLCFGVVVLGITTVFGGWFYFDQKLNDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDADKPSVDKSAGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=901386 SC192_RS01515 WP_348895805.1 321466..322107(+) (pilN) [Acinetobacter sp. 2019-01-05]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGCGCTGAGGGAGCAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTAGTCGTTTTAGGAATTACAACCGTATTTGGGGGATGGTTTTATTTTGATCAAAAATTAAATGATCAAGAACAGGCAA
ATCAACTGATTACAAGTACCAATCAAAACCTCGATCAACAATTAAAAGCATTAAACGGTTTACAAGAACAGCGCGATGCC
ATCATTGAGCGTATGAAGTTGATTCAGGGTTTACAAAGCCAACGCCCAGTAGTCGTAAGACTGGTTGATGAACTTGTTCG
AGTTACACCACCAGCAATGTATCTCACTAAGTTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCTGAATTACTTCGTAATCTTGAAGCATCGCCTTGGTATCGTAATGCATTTATGAACTCTTTTTTGGCT
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTAGAAGACCACTACGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACTGATGATGCTGATAAACCATCCGTAGATAAAAGTGCGGGGGCAGCCAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

93.427

100

0.934
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709