Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RA179_RS16560 Genome accession   NZ_CP138201
Coordinates   3189544..3190188 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain DY299     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3184544..3195188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS16525 (RA179_16525) - 3185737..3186168 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  RA179_RS16530 (RA179_16530) - 3186168..3186509 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  RA179_RS16535 (RA179_16535) - 3186502..3187983 (+) 1482 WP_106019476.1 Na+/H+ antiporter subunit D -
  RA179_RS16540 (RA179_16540) - 3187989..3188465 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  RA179_RS16545 (RA179_16545) - 3188465..3188749 (+) 285 WP_106019477.1 Na(+)/H(+) antiporter subunit F1 -
  RA179_RS16550 (RA179_16550) mnhG 3188733..3189107 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  RA179_RS16555 (RA179_16555) - 3189146..3189526 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  RA179_RS16560 (RA179_16560) comA 3189544..3190188 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  RA179_RS16565 (RA179_16565) comP 3190269..3192575 (-) 2307 WP_254517859.1 histidine kinase Regulator
  RA179_RS16570 (RA179_16570) comX 3192591..3192812 (-) 222 WP_059292642.1 competence pheromone ComX -
  RA179_RS16575 (RA179_16575) - 3192809..3193678 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  RA179_RS16580 (RA179_16580) degQ 3193863..3194003 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  RA179_RS16585 (RA179_16585) - 3194464..3194832 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=901367 RA179_RS16560 WP_024122680.1 3189544..3190188(-) (comA) [Bacillus halotolerans strain DY299]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=901367 RA179_RS16560 WP_024122680.1 3189544..3190188(-) (comA) [Bacillus halotolerans strain DY299]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCGGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986