Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RA179_RS12930 Genome accession   NZ_CP138201
Coordinates   2534795..2535562 (-) Length   255 a.a.
NCBI ID   WP_127696758.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2529795..2540562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS12910 (RA179_12910) - 2529969..2530781 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  RA179_RS12915 (RA179_12915) ccpN 2530807..2531445 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  RA179_RS12920 (RA179_12920) glyS 2531579..2533618 (-) 2040 WP_127696759.1 glycine--tRNA ligase subunit beta -
  RA179_RS12925 (RA179_12925) glyQ 2533611..2534498 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  RA179_RS12930 (RA179_12930) recO 2534795..2535562 (-) 768 WP_127696758.1 DNA repair protein RecO Machinery gene
  RA179_RS12935 (RA179_12935) - 2535599..2535742 (-) 144 WP_024122087.1 YqzL family protein -
  RA179_RS12940 (RA179_12940) era 2535886..2536791 (-) 906 WP_101864543.1 GTPase Era -
  RA179_RS12945 (RA179_12945) cdd 2536772..2537182 (-) 411 WP_024122088.1 cytidine deaminase -
  RA179_RS12950 (RA179_12950) - 2537296..2537673 (-) 378 WP_101864544.1 diacylglycerol kinase family protein -
  RA179_RS12955 (RA179_12955) ybeY 2537654..2538127 (-) 474 WP_318751888.1 rRNA maturation RNase YbeY -
  RA179_RS12960 (RA179_12960) pgpH 2538128..2540263 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29323.00 Da        Isoelectric Point: 8.3105

>NTDB_id=901354 RA179_RS12930 WP_127696758.1 2534795..2535562(-) (recO) [Bacillus halotolerans strain DY299]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQSFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=901354 RA179_RS12930 WP_127696758.1 2534795..2535562(-) (recO) [Bacillus halotolerans strain DY299]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGTCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGT
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGTCATCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTATCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941