Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RA179_RS00575 | Genome accession | NZ_CP138201 |
| Coordinates | 103065..105497 (+) | Length | 810 a.a. |
| NCBI ID | WP_010332750.1 | Uniprot ID | A0A9Q6A5H8 |
| Organism | Bacillus halotolerans strain DY299 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 98065..110497
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RA179_RS00560 (RA179_00560) | ctsR | 100942..101406 (+) | 465 | WP_010332747.1 | transcriptional regulator CtsR | - |
| RA179_RS00565 (RA179_00565) | - | 101420..101977 (+) | 558 | WP_095714843.1 | UvrB/UvrC motif-containing protein | - |
| RA179_RS00570 (RA179_00570) | - | 101977..103068 (+) | 1092 | WP_059291687.1 | protein arginine kinase | - |
| RA179_RS00575 (RA179_00575) | clpC | 103065..105497 (+) | 2433 | WP_010332750.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| RA179_RS00580 (RA179_00580) | radA | 105589..106965 (+) | 1377 | WP_044153447.1 | DNA repair protein RadA | Machinery gene |
| RA179_RS00585 (RA179_00585) | disA | 106969..108051 (+) | 1083 | WP_003242042.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| RA179_RS00590 (RA179_00590) | - | 108171..109271 (+) | 1101 | WP_059291688.1 | PIN/TRAM domain-containing protein | - |
| RA179_RS00595 (RA179_00595) | ispD | 109286..109984 (+) | 699 | WP_095714844.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| RA179_RS00600 (RA179_00600) | ispF | 109977..110453 (+) | 477 | WP_255004949.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90054.61 Da Isoelectric Point: 6.1838
>NTDB_id=901307 RA179_RS00575 WP_010332750.1 103065..105497(+) (clpC) [Bacillus halotolerans strain DY299]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVSVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLA
EIVSLMSDQLTKRLKEQDLSIELTEAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGHHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVSVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLA
EIVSLMSDQLTKRLKEQDLSIELTEAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGHHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=901307 RA179_RS00575 WP_010332750.1 103065..105497(+) (clpC) [Bacillus halotolerans strain DY299]
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAGGTACTGGCGCTTGCACAGGAAGAAGCACTTCGTTTAGGTCATAA
TAATATCGGCACTGAGCATATTTTATTAGGACTGGTGCGAGAAGGAGAGGGTATCGCTGCTAAAGCACTTCAAGCGCTTG
GACTTGGTTCAGATAAAATCCAAAAAGAAGTTGAGAGCTTAATTGGGCGCGGACAGGAAATGTCTCAAACGATTCATTAT
ACTCCGAGAGCTAAAAAAGTCATTGAGCTATCAATGGATGAGGCCAGAAAACTCGGCCATTCTTATGTGGGAACAGAGCA
TATTCTTCTTGGACTTATTCGCGAAGGTGAAGGTGTGGCTGCGAGAGTGCTTAACAATCTCGGAGTCAGCTTAAATAAAG
CAAGACAGCAAGTGCTTCAGCTTCTTGGAAGTAATGAAACAGGTTCATCAGCGGCTGGAACAAACAGCAATGCGAATACG
CCTACACTAGATAGCCTGGCAAGAGATTTAACAGCGATTGCGAAGGAAGACAGCCTTGATCCGGTTATCGGCAGAAGCAA
AGAAATTCAGCGTGTCATTGAAGTGCTGAGCCGCAGAACGAAAAACAATCCTGTTCTGATTGGGGAACCGGGCGTAGGGA
AAACAGCTATCGCAGAAGGTCTTGCACAGCAAATTATCAATAATGAAGTTCCCGAAATTTTACGGGATAAACGCGTTATG
ACATTAGACATGGGAACAGTGGTTGCCGGTACAAAATATCGCGGTGAATTTGAGGATCGTTTGAAGAAAGTTATGGATGA
AATCCGTCAGGCAGGAAACATCATTCTATTCATTGATGAGCTCCATACACTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGATGCATCCAACATTTTGAAACCTTCACTTGCTCGCGGAGAACTTCAGTGCATTGGTGCGACAACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCTCTGGAACGCCGTTTTCAGCCAATCCAGGTTGATCAGCCGTCTGTAGACGAAAG
CATTCAAATCCTAAAAGGCTTGCGTGACCGATATGAAGCCCACCACCGCGTTTCTATCACTGACGAAGCCATTGAGGCTG
CGGTTAAGCTTTCTGACCGATATATCTCTGACCGTTTCCTTCCGGATAAAGCTATTGACTTGATCGATGAAGCGGGTTCA
AAGGTCAGATTGCGTTCCTTTACAACGCCTCCTAATTTAAAAGAGCTTGAACAGAAACTTGATGAAGTTCGTAAAGAGAA
GGATGCTGCGGTGCAAAGCCAAGAGTTTGAAAAAGCGGCTTCCTTACGTGATACGGAACAGCGTTTGCGTGAACAAGTGG
AAGATACGAAAAAATCATGGAAAGAGAAGCAGGGACAGGAAAACTCAGAGGTTTCTGTGGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCAAAAATCGCTCAAACTGAAACTGATAAGCTTCTTAATATGGAGAGCATTCTTCA
TTCCCGTGTCATCGGCCAAGATGAAGCTGTTGTAGCCGTTGCTAAAGCGGTCAGACGTGCAAGAGCAGGGCTAAAAGACC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTAGGTAAAACGGAGCTTGCACGAGCACTTGCTGAG
TCTATCTTCGGTGATGAAGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCGACTTCTAGACTTGT
AGGTTCACCTCCAGGGTATGTGGGATACGATGAGGGCGGCCAATTAACAGAGAAGGTAAGAAGAAAACCATACTCTGTTG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGACGTCTTCAATATCCTCCTTCAAGTACTTGAGGACGGACGATTGACT
GATTCTAAAGGCCGTACAGTTGATTTCCGCAACACGATTCTGATCATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAACAAATATGTCGGCTTCAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAGGATAAAGTGATGGGTGAGCTGA
AACGTGCGTTCAGACCGGAATTCATCAACCGTATTGATGAAATTATCGTCTTCCATTCACTCGAGAAAAAACATCTGGCT
GAAATCGTGTCATTGATGTCTGATCAATTAACGAAACGTCTTAAAGAACAGGATCTTTCTATTGAATTGACGGAAGCTGC
GAAAGCAAAAGTCGCGGAAGAGGGCGTAGATCTTGAATACGGTGCCCGCCCGCTCAGAAGAGCCATTCAAAAACATGTGG
AGGACCGTTTATCTGAAGAGCTGCTCAGAGGTAACATTCATAAAGGACACCATATCGTTCTTGATGTAGAAGATGGCGAA
TTTGTCGTAAAAACGACAGCTAAAACGAATTAA
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAGGTACTGGCGCTTGCACAGGAAGAAGCACTTCGTTTAGGTCATAA
TAATATCGGCACTGAGCATATTTTATTAGGACTGGTGCGAGAAGGAGAGGGTATCGCTGCTAAAGCACTTCAAGCGCTTG
GACTTGGTTCAGATAAAATCCAAAAAGAAGTTGAGAGCTTAATTGGGCGCGGACAGGAAATGTCTCAAACGATTCATTAT
ACTCCGAGAGCTAAAAAAGTCATTGAGCTATCAATGGATGAGGCCAGAAAACTCGGCCATTCTTATGTGGGAACAGAGCA
TATTCTTCTTGGACTTATTCGCGAAGGTGAAGGTGTGGCTGCGAGAGTGCTTAACAATCTCGGAGTCAGCTTAAATAAAG
CAAGACAGCAAGTGCTTCAGCTTCTTGGAAGTAATGAAACAGGTTCATCAGCGGCTGGAACAAACAGCAATGCGAATACG
CCTACACTAGATAGCCTGGCAAGAGATTTAACAGCGATTGCGAAGGAAGACAGCCTTGATCCGGTTATCGGCAGAAGCAA
AGAAATTCAGCGTGTCATTGAAGTGCTGAGCCGCAGAACGAAAAACAATCCTGTTCTGATTGGGGAACCGGGCGTAGGGA
AAACAGCTATCGCAGAAGGTCTTGCACAGCAAATTATCAATAATGAAGTTCCCGAAATTTTACGGGATAAACGCGTTATG
ACATTAGACATGGGAACAGTGGTTGCCGGTACAAAATATCGCGGTGAATTTGAGGATCGTTTGAAGAAAGTTATGGATGA
AATCCGTCAGGCAGGAAACATCATTCTATTCATTGATGAGCTCCATACACTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGATGCATCCAACATTTTGAAACCTTCACTTGCTCGCGGAGAACTTCAGTGCATTGGTGCGACAACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCTCTGGAACGCCGTTTTCAGCCAATCCAGGTTGATCAGCCGTCTGTAGACGAAAG
CATTCAAATCCTAAAAGGCTTGCGTGACCGATATGAAGCCCACCACCGCGTTTCTATCACTGACGAAGCCATTGAGGCTG
CGGTTAAGCTTTCTGACCGATATATCTCTGACCGTTTCCTTCCGGATAAAGCTATTGACTTGATCGATGAAGCGGGTTCA
AAGGTCAGATTGCGTTCCTTTACAACGCCTCCTAATTTAAAAGAGCTTGAACAGAAACTTGATGAAGTTCGTAAAGAGAA
GGATGCTGCGGTGCAAAGCCAAGAGTTTGAAAAAGCGGCTTCCTTACGTGATACGGAACAGCGTTTGCGTGAACAAGTGG
AAGATACGAAAAAATCATGGAAAGAGAAGCAGGGACAGGAAAACTCAGAGGTTTCTGTGGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCAAAAATCGCTCAAACTGAAACTGATAAGCTTCTTAATATGGAGAGCATTCTTCA
TTCCCGTGTCATCGGCCAAGATGAAGCTGTTGTAGCCGTTGCTAAAGCGGTCAGACGTGCAAGAGCAGGGCTAAAAGACC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTAGGTAAAACGGAGCTTGCACGAGCACTTGCTGAG
TCTATCTTCGGTGATGAAGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCGACTTCTAGACTTGT
AGGTTCACCTCCAGGGTATGTGGGATACGATGAGGGCGGCCAATTAACAGAGAAGGTAAGAAGAAAACCATACTCTGTTG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGACGTCTTCAATATCCTCCTTCAAGTACTTGAGGACGGACGATTGACT
GATTCTAAAGGCCGTACAGTTGATTTCCGCAACACGATTCTGATCATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAACAAATATGTCGGCTTCAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAGGATAAAGTGATGGGTGAGCTGA
AACGTGCGTTCAGACCGGAATTCATCAACCGTATTGATGAAATTATCGTCTTCCATTCACTCGAGAAAAAACATCTGGCT
GAAATCGTGTCATTGATGTCTGATCAATTAACGAAACGTCTTAAAGAACAGGATCTTTCTATTGAATTGACGGAAGCTGC
GAAAGCAAAAGTCGCGGAAGAGGGCGTAGATCTTGAATACGGTGCCCGCCCGCTCAGAAGAGCCATTCAAAAACATGTGG
AGGACCGTTTATCTGAAGAGCTGCTCAGAGGTAACATTCATAAAGGACACCATATCGTTCTTGATGTAGAAGATGGCGAA
TTTGTCGTAAAAACGACAGCTAAAACGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
98.889 |
100 |
0.989 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.249 |
99.012 |
0.498 |
| clpC | Streptococcus thermophilus LMD-9 |
46.489 |
100 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.247 |
100 |
0.472 |
| clpC | Streptococcus pneumoniae Rx1 |
45.365 |
99.877 |
0.453 |
| clpC | Streptococcus pneumoniae D39 |
45.365 |
99.877 |
0.453 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus mutans UA159 |
43.462 |
100 |
0.443 |
| clpE | Streptococcus mutans UA159 |
53.159 |
80.123 |
0.426 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.523 |
87.778 |
0.426 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.772 |
76.914 |
0.414 |
| clpE | Streptococcus pneumoniae Rx1 |
53.772 |
76.914 |
0.414 |
| clpE | Streptococcus pneumoniae D39 |
53.772 |
76.914 |
0.414 |
| clpE | Streptococcus pneumoniae R6 |
53.772 |
76.914 |
0.414 |