Detailed information NTG0901293

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SBP18_RS08535
• Genome accession: NZ_CP138198
• Coordinates: 1804339..1805433 (+)
• Length: 364 a.a.
• NCBI ID: WP_318667594.1
• Uniprot ID: -
• Organism: Rhodoferax ferrireducens strain YZ-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1799339..1810433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SBP18_RS08515 (SBP18_08515)	rsmD	1799632..1800258 (-)	627	WP_318667590.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
SBP18_RS08520 (SBP18_08520)	-	1800308..1801279 (-)	972	WP_318667591.1	YihY/virulence factor BrkB family protein	-
SBP18_RS08525 (SBP18_08525)	-	1801365..1802747 (-)	1383	WP_318667592.1	pitrilysin family protein	-
SBP18_RS08530 (SBP18_08530)	-	1802780..1804309 (-)	1530	WP_318667593.1	pitrilysin family protein	-
SBP18_RS08535 (SBP18_08535)	pilA	1804339..1805433 (+)	1095	WP_318667594.1	signal recognition particle-docking protein FtsY	Machinery gene
SBP18_RS08540 (SBP18_08540)	-	1805510..1806541 (+)	1032	WP_318667595.1	GGDEF domain-containing protein	-
SBP18_RS08545 (SBP18_08545)	-	1806604..1807275 (+)	672	WP_318667596.1	carboxylesterase	-
SBP18_RS08550 (SBP18_08550)	-	1807354..1807971 (+)	618	WP_318667597.1	ParA family protein	-
SBP18_RS08555 (SBP18_08555)	-	1808048..1808503 (+)	456	WP_318667598.1	MaoC family dehydratase	-
SBP18_RS08560 (SBP18_08560)	-	1808480..1808965 (-)	486	WP_011463975.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-
SBP18_RS08565 (SBP18_08565)	-	1808975..1809679 (-)	705	WP_318667599.1	ComF family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 38255.17 Da
• Isoelectric Point: 7.1472

>NTDB_id=901293 SBP18_RS08535 WP_318667594.1 1804339..1805433(+) (pilA) [Rhodoferax ferrireducens strain YZ-1]
MFSFFKKKPPPTPVLPKSPDAATEPAGAATAIRSGSLIGSALVTPIDIPLPASVPPERQKWLDKLKAGLGKTANSISGVF
SGTRIDEALYEELEGALLMADTGVAATQYLLDDLRRKVKESGITHPVALKNILVASLTELLLPLEKPLVIGQHKPTVIMV
TGVNGAGKTTSIGKLTQHLAMHGASVLLAAADTFRAAAREQLGVWATRAGTSTDTPDHSVEIISQQGGDPAAVSFDAVSA
GKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILLVIDGNTGQNALTQVKAFDEALGLTGLIVTKLDG
TAKGGVLAAIARERPVPVYFIGVGEQLEDLETFNAREFAQALLA

Nucleotide

• Length: 1095 bp

>NTDB_id=901293 SBP18_RS08535 WP_318667594.1 1804339..1805433(+) (pilA) [Rhodoferax ferrireducens strain YZ-1]
ATGTTCAGTTTTTTCAAAAAGAAACCTCCTCCCACCCCTGTATTGCCAAAGTCACCCGACGCGGCGACTGAGCCAGCGGG
CGCGGCAACAGCCATCCGCAGTGGTTCCTTGATTGGCAGCGCCCTGGTCACGCCGATTGACATTCCCCTGCCCGCCAGTG
TGCCGCCCGAGCGGCAAAAGTGGCTGGACAAACTTAAAGCAGGCCTGGGCAAGACGGCCAACAGCATCTCCGGTGTTTTT
AGCGGCACCCGGATTGACGAGGCGCTCTACGAAGAGCTTGAAGGCGCGCTGCTGATGGCCGATACGGGGGTCGCGGCCAC
CCAGTACCTGCTCGATGATTTGCGGCGCAAGGTCAAGGAGAGTGGCATTACCCACCCGGTGGCCCTGAAAAACATTTTGG
TGGCAAGCCTCACCGAATTGCTGCTGCCACTGGAAAAGCCGCTGGTCATTGGGCAGCACAAGCCCACCGTCATCATGGTC
ACGGGTGTTAATGGTGCGGGCAAAACCACCTCGATCGGCAAGCTCACCCAGCACCTGGCGATGCACGGCGCTAGCGTACT
GCTGGCCGCTGCGGATACTTTCCGGGCGGCCGCGCGTGAGCAACTGGGCGTTTGGGCGACGCGAGCGGGCACCAGCACCG
ACACACCCGACCACAGCGTGGAGATCATCAGCCAGCAGGGTGGCGACCCGGCGGCCGTGAGCTTTGATGCGGTCAGCGCT
GGCAAGGCGCGCGGCAAAGACGTGGTCTTGGTCGACACCGCCGGACGCCTGCCAACCCAGTTGCACTTGATGGAAGAATT
GCGAAAGATCAAGCGCGTGGTGCAAAAAGCCGACGCCACGGCACCGCATGAAATCCTGCTGGTGATCGACGGCAACACCG
GTCAAAACGCCTTGACGCAAGTGAAGGCATTTGACGAGGCGCTGGGCCTGACGGGCCTGATCGTCACCAAGCTGGACGGC
ACCGCCAAGGGCGGTGTGCTGGCTGCCATAGCGCGGGAGCGGCCGGTGCCTGTGTACTTCATCGGCGTGGGCGAGCAGCT
TGAAGACCTTGAGACGTTTAATGCCCGTGAGTTTGCGCAGGCACTGTTGGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (155-363)

• SRP54-type protein, helical bundle domain (SRP54_N) (75-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.416	84.615	0.503