Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SBP18_RS06830 Genome accession   NZ_CP138198
Coordinates   1453521..1453919 (+) Length   132 a.a.
NCBI ID   WP_011463673.1    Uniprot ID   Q21YP8
Organism   Rhodoferax ferrireducens strain YZ-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1448521..1458919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP18_RS06805 (SBP18_06805) tilS 1449197..1450159 (+) 963 WP_318667368.1 tRNA lysidine(34) synthetase TilS -
  SBP18_RS06810 (SBP18_06810) - 1450172..1451440 (+) 1269 WP_011463655.1 aspartate kinase -
  SBP18_RS06820 (SBP18_06820) hemL 1451741..1453051 (-) 1311 WP_318667369.1 glutamate-1-semialdehyde 2,1-aminomutase -
  SBP18_RS06825 (SBP18_06825) - 1453307..1453459 (+) 153 WP_011463672.1 rubredoxin -
  SBP18_RS06830 (SBP18_06830) pilG 1453521..1453919 (+) 399 WP_011463673.1 PleD family two-component system response regulator Regulator
  SBP18_RS06835 (SBP18_06835) - 1453919..1454284 (+) 366 WP_011463674.1 PleD family two-component system response regulator -
  SBP18_RS06840 (SBP18_06840) - 1454300..1454830 (+) 531 WP_011463675.1 chemotaxis protein CheW -
  SBP18_RS06845 (SBP18_06845) - 1454851..1457130 (+) 2280 WP_011463676.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14679.90 Da        Isoelectric Point: 7.8157

>NTDB_id=901290 SBP18_RS06830 WP_011463673.1 1453521..1453919(+) (pilG) [Rhodoferax ferrireducens strain YZ-1]
MNTTGSTFKVLVIDDSNTIRRSAEIFLKQGGHEVMLAEDGFDALAKVNDYQPQLIFCDILMPRLDGYQTCAIIKRNAKYS
DVPIVMLSSKDGVFDKARGRMVGAQDYLTKPFTKDQLLQAVQQFGKVAQGVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=901290 SBP18_RS06830 WP_011463673.1 1453521..1453919(+) (pilG) [Rhodoferax ferrireducens strain YZ-1]
GTGAATACGACTGGATCGACTTTCAAAGTTCTGGTGATTGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTTT
GAAACAAGGCGGACACGAAGTCATGCTGGCTGAAGATGGTTTTGATGCCTTGGCAAAAGTCAATGACTACCAGCCCCAGC
TCATTTTTTGCGACATCCTGATGCCCAGATTGGATGGCTACCAGACCTGTGCGATCATCAAGCGAAATGCCAAGTATTCA
GACGTGCCCATAGTCATGTTGTCTTCGAAAGACGGCGTTTTTGACAAAGCACGCGGACGCATGGTCGGGGCGCAGGATTA
CTTGACAAAACCATTTACCAAAGACCAGTTATTGCAAGCTGTACAGCAGTTCGGCAAAGTGGCGCAAGGAGTTAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q21YP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

87.879

0.515