Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SBP18_RS04350 Genome accession   NZ_CP138198
Coordinates   898006..899598 (+) Length   530 a.a.
NCBI ID   WP_318667014.1    Uniprot ID   -
Organism   Rhodoferax ferrireducens strain YZ-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893006..904598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP18_RS04325 (SBP18_04325) argS 893235..894932 (+) 1698 WP_318667010.1 arginine--tRNA ligase -
  SBP18_RS04330 (SBP18_04330) - 895000..895623 (+) 624 WP_318667011.1 SPOR domain-containing protein -
  SBP18_RS04335 (SBP18_04335) - 895697..896371 (+) 675 WP_318667012.1 thiol:disulfide interchange protein DsbA/DsbL -
  SBP18_RS04340 (SBP18_04340) lptA 896557..897198 (+) 642 WP_318667013.1 lipopolysaccharide transport periplasmic protein LptA -
  SBP18_RS04345 (SBP18_04345) lptB 897198..897992 (+) 795 WP_011463100.1 LPS export ABC transporter ATP-binding protein -
  SBP18_RS04350 (SBP18_04350) rpoN/rpoN1 898006..899598 (+) 1593 WP_318667014.1 RNA polymerase factor sigma-54 Machinery gene
  SBP18_RS04355 (SBP18_04355) - 899668..900945 (+) 1278 WP_318667015.1 class I SAM-dependent RNA methyltransferase -
  SBP18_RS04360 (SBP18_04360) - 900942..901352 (+) 411 WP_318667016.1 putative toxin-antitoxin system toxin component, PIN family -
  SBP18_RS04365 (SBP18_04365) - 901443..903119 (+) 1677 WP_318667017.1 histidine kinase -
  SBP18_RS04370 (SBP18_04370) - 903319..904065 (+) 747 WP_318667018.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58068.52 Da        Isoelectric Point: 4.8255

>NTDB_id=901288 SBP18_RS04350 WP_318667014.1 898006..899598(+) (rpoN/rpoN1) [Rhodoferax ferrireducens strain YZ-1]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSAEVDQMLDDNPFLELTADESPREEFGLAQADTPVRGDDLDAERATS
SIADYPTETRAAAENDSNDSPLSADDAQSWEGDGSASLAPDDSEWGGDAKARSNNLNGDDDTDVTELARTQVSLQSHLHA
QALALRLSAEDRAALQFLIESLNDDGYLEDTLTSLAEGLAGGDEAQVEQLVHHFTVALGLLQSLEPAGVGARDLAECLSL
QLRALQQLERLEPARAATLQVALRICAQPMELLARRDVKRLMLLCDATDAAVREAIALIARLEPKPGRRFVNVERNIVVP
DVLVIQVGQGTQAKFQVRLNTDVMPRLRVHDIYANALKQHKGGGSDASSYAALQQRLQEARWFIKNIQQRFDTILRVSSA
IVERQKSFFMHGELAMRPLVLREIAEELGLHESTISRVTTAKYMATPFGTFELKYFFGSGLGTESGGNASSTAVRALIKQ
FISAESPAKPLSDHQLSEMLKEQGIECARRTVAKYREGLRIAPASLRKAL

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=901288 SBP18_RS04350 WP_318667014.1 898006..899598(+) (rpoN/rpoN1) [Rhodoferax ferrireducens strain YZ-1]
ATGAAACAAGGCCTTTCCCTTCGGGTGTCGCAGCATCTGGCGCTGACGCCACAGTTGCAGCAGTCGATCCGCTTGCTGCA
ACTCTCCACGCTGGAGCTCAGCGCGGAGGTGGACCAGATGCTCGATGACAACCCATTCCTGGAGTTGACGGCGGACGAGT
CGCCGCGTGAGGAATTTGGTCTGGCGCAGGCTGACACACCGGTCCGGGGTGATGACCTCGACGCTGAACGTGCTACAAGT
TCGATAGCTGATTACCCAACAGAGACGAGGGCTGCAGCCGAGAATGATTCAAATGATTCGCCGCTCTCGGCGGACGATGC
GCAGAGTTGGGAGGGCGACGGCAGCGCCTCCTTGGCGCCCGACGACAGCGAGTGGGGCGGTGACGCCAAAGCCCGCAGCA
ACAACCTCAACGGCGATGACGACACCGATGTGACCGAGCTGGCGCGCACCCAGGTGTCGCTGCAAAGCCACCTGCACGCG
CAGGCGCTGGCCTTGCGCCTGAGTGCCGAGGATCGCGCCGCCTTGCAGTTCTTGATCGAGTCGCTTAATGACGATGGTTA
TCTGGAAGACACGCTGACCTCGCTCGCCGAGGGGCTGGCCGGCGGCGACGAGGCGCAGGTGGAGCAGCTGGTCCATCATT
TCACAGTTGCCCTGGGGCTGCTGCAGAGTCTGGAGCCGGCGGGTGTGGGTGCGCGAGATCTGGCGGAATGCCTGAGTCTG
CAACTGCGCGCCTTGCAGCAGCTGGAGCGACTAGAGCCGGCCCGCGCTGCCACCCTGCAGGTGGCGCTGCGTATTTGTGC
CCAACCCATGGAGTTGCTGGCCCGGCGTGACGTCAAGCGCCTGATGCTGCTGTGCGACGCGACGGATGCTGCCGTGCGCG
AAGCCATTGCGCTGATTGCCCGTCTGGAGCCCAAGCCGGGGCGGCGCTTTGTGAATGTGGAGCGCAACATCGTGGTGCCC
GATGTGCTGGTGATTCAAGTGGGCCAGGGCACGCAGGCCAAATTTCAGGTGCGCCTGAACACCGATGTGATGCCGCGCCT
GCGTGTGCACGACATCTACGCCAATGCCCTCAAACAGCACAAGGGCGGCGGTAGCGATGCGTCCAGCTACGCCGCCCTGC
AGCAGCGCCTGCAGGAGGCACGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATCCTGCGCGTCAGCTCGGCC
ATCGTCGAGCGGCAAAAGAGTTTTTTCATGCACGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGTGAGATTGCCGAAGA
GCTCGGTCTGCACGAGTCCACCATCAGCCGCGTGACCACCGCCAAATACATGGCGACCCCGTTTGGCACCTTCGAACTCA
AGTATTTCTTTGGCTCCGGCCTGGGCACCGAGTCGGGTGGCAATGCGTCGAGCACGGCGGTGCGGGCCTTGATCAAACAA
TTTATCAGCGCCGAGAGCCCGGCCAAGCCGCTCAGTGACCACCAGTTGTCCGAGATGCTCAAAGAGCAGGGCATCGAATG
CGCCCGCCGCACCGTGGCCAAATACCGCGAGGGGCTGCGCATCGCCCCCGCATCCTTGAGAAAGGCATTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(373-528)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(145-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.841

100

0.513