Detailed information NTG0090124

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LDO36_RS09580
• Genome accession: NZ_AP025155
• Coordinates: 2148516..2149940 (+)
• Length: 474 a.a.
• NCBI ID: WP_126609466.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain TUMSAT-OK2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2143516..2154940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO36_RS09560	-	2144726..2145682 (+)	957	WP_126607134.1	5'-nucleotidase	-
LDO36_RS09570	-	2145831..2146544 (+)	714	WP_224055095.1	hypothetical protein	-
LDO36_RS09575	-	2146686..2147960 (+)	1275	WP_224055096.1	magnesium transporter MgtE N-terminal domain-containing protein	-
LDO36_RS09580	sbcB	2148516..2149940 (+)	1425	WP_126609466.1	exodeoxyribonuclease I	Machinery gene
LDO36_RS09585	-	2149954..2150316 (+)	363	WP_101115362.1	CidA/LrgA family protein	-
LDO36_RS09590	-	2150316..2150990 (+)	675	WP_101115406.1	LrgB family protein	-
LDO36_RS09595	cdd	2151314..2152201 (+)	888	WP_126609467.1	cytidine deaminase	-
LDO36_RS09600	purT	2152349..2153524 (+)	1176	WP_126609468.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
LDO36_RS09605	-	2153640..2154098 (+)	459	WP_224055097.1	helix-turn-helix domain-containing protein	-
LDO36_RS09610	-	2154187..2154516 (+)	330	WP_224055098.1	IS3 family transposase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54642.92 Da
• Isoelectric Point: 5.0169

>NTDB_id=90124 LDO36_RS09580 WP_126609466.1 2148516..2149940(+) (sbcB) [Vibrio penaeicida strain TUMSAT-OK2]
MPQDNQPSLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAVSKGLPEP
EFIRKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGVNWPKREDGHT
SFKLEHLSVENGIEHENAHDAMADVIATIEMARKVKEAQPKLFDYLFSMRHKRKLNELVDIVNMTPLMHVSGMFGAECAY
TSWVVPLAWHPTNQNAVAMVNLAMDPTPLIELSSDELRTRLYTRRDQLEEGQLPVPVKLVHLNKCPVLAPAKTLTAENAQ
FIGIDREQCLKNLALIKQHPEIREKLIELYQNKDEYDVDPNVDTQLYNGFFSPVDKATMDIIREKAPEQLAGMEINVKDE
RIAPLLFRYRARHYPWTLDESEQAKWAAHCRDYFESNLPDYMQNLENLVHEHDGDERKVSLLKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=90124 LDO36_RS09580 WP_126609466.1 2148516..2149940(+) (sbcB) [Vibrio penaeicida strain TUMSAT-OK2]
ATGCCTCAAGATAATCAGCCCTCTCTGTTTTTCTTCGATTACGAAACCTGGGGAACCAGTCCAGCCAAAGATCGACCAAG
TCAATTTGCAGGCGTAAGAACGGATATGGATCTCAATATCATTGGCGAGCCTTTGGTTATTTACTGCCAACCGCCCTCTG
ATTACCTCCCCTCTCCAGAAGCGGCGCTTATTACCGGCATCACTCCACAAACAGCAGTGTCTAAAGGGCTTCCTGAACCT
GAATTTATACGAAAAATTCATGATGAGCTCTCTACTCCAAACACAACGAGCCTTGGCTACAACAGCATTCGATTTGATGA
TGAAGTTTCTAGGTACACTCTTTACCGGAATTTCTTCGACCCTTACGCATGGAGTTGGCAAAATGGTAACTCTCGTTGGG
ATTTGCTCGATGTGATGCGTGCTTGCCATGCCCTTAGACCGGAAGGCGTCAATTGGCCAAAGCGTGAAGATGGGCACACC
AGCTTTAAACTGGAGCATTTGTCTGTCGAAAATGGGATAGAACACGAAAATGCCCACGATGCGATGGCAGATGTTATCGC
AACCATTGAAATGGCGAGAAAAGTTAAGGAAGCGCAACCTAAGCTGTTTGATTACCTCTTTAGCATGCGCCACAAACGCA
AACTCAATGAGTTGGTCGACATCGTCAACATGACACCGCTAATGCATGTTTCTGGCATGTTTGGGGCAGAATGCGCTTAT
ACCTCTTGGGTTGTTCCTTTGGCTTGGCACCCAACCAACCAAAACGCCGTGGCAATGGTTAACCTTGCCATGGACCCTAC
CCCACTTATTGAACTCAGTTCCGATGAATTAAGAACAAGGCTATACACACGCCGAGATCAACTGGAAGAAGGGCAATTGC
CAGTTCCCGTTAAGCTTGTTCACCTAAATAAATGCCCTGTTCTCGCACCAGCGAAAACGTTAACGGCAGAAAATGCCCAA
TTTATCGGAATCGACAGAGAACAGTGCTTGAAAAATCTGGCACTCATTAAACAACACCCAGAAATTAGAGAAAAGCTTAT
CGAGCTATACCAGAACAAAGATGAGTACGATGTCGATCCAAACGTGGATACTCAGCTTTATAATGGGTTCTTTTCTCCGG
TAGACAAAGCCACCATGGACATCATTCGAGAAAAAGCCCCAGAGCAATTAGCGGGGATGGAAATCAATGTTAAAGATGAA
CGCATTGCCCCACTTCTGTTCCGTTATCGTGCTAGGCACTACCCATGGACGCTCGATGAATCAGAGCAAGCTAAATGGGC
TGCGCATTGTCGAGATTATTTCGAAAGTAATTTGCCCGACTACATGCAGAACCTTGAAAACTTAGTTCACGAACATGATG
GTGATGAAAGAAAGGTATCGCTGTTAAAATCCGTATATCAATACGTAGAAAAATTGGTCTCATAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.784	99.789	0.736