Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SBO70_RS07345 Genome accession   NZ_CP137890
Coordinates   1426512..1427120 (+) Length   202 a.a.
NCBI ID   WP_060675396.1    Uniprot ID   -
Organism   Bacillus velezensis strain GJJK74     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1421512..1432120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBO70_RS07315 (SBO70_07315) - 1421725..1422180 (+) 456 WP_033574618.1 flavodoxin -
  SBO70_RS07320 (SBO70_07320) dapD 1422262..1422972 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SBO70_RS07325 (SBO70_07325) - 1423043..1424167 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  SBO70_RS07330 (SBO70_07330) - 1424228..1424473 (+) 246 WP_003154596.1 YkuS family protein -
  SBO70_RS07335 (SBO70_07335) - 1424507..1425313 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  SBO70_RS07340 (SBO70_07340) - 1425602..1426060 (+) 459 WP_015417374.1 redoxin domain-containing protein -
  SBO70_RS07345 (SBO70_07345) rok 1426512..1427120 (+) 609 WP_060675396.1 transcriptional regulator Rok Regulator
  SBO70_RS07350 (SBO70_07350) - 1427141..1428133 (-) 993 WP_060675397.1 hypothetical protein -
  SBO70_RS07355 (SBO70_07355) - 1428279..1428881 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  SBO70_RS07360 (SBO70_07360) - 1428933..1429952 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  SBO70_RS07365 (SBO70_07365) glp 1429970..1431262 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  SBO70_RS07370 (SBO70_07370) mobB 1431223..1431744 (+) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22896.92 Da        Isoelectric Point: 9.4832

>NTDB_id=901172 SBO70_RS07345 WP_060675396.1 1426512..1427120(+) (rok) [Bacillus velezensis strain GJJK74]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTANDTAAE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=901172 SBO70_RS07345 WP_060675396.1 1426512..1427120(+) (rok) [Bacillus velezensis strain GJJK74]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

96.04

0.827