Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   SBK94_RS18375 Genome accession   NZ_CP137889
Coordinates   3677628..3678773 (+) Length   381 a.a.
NCBI ID   WP_014306020.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3672628..3683773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS18355 (SBK94_18355) - 3673102..3673818 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  SBK94_RS18360 (SBK94_18360) narK 3673916..3675106 (-) 1191 WP_014306018.1 nitrate transporter NarK -
  SBK94_RS18365 (SBK94_18365) argS 3675241..3676911 (-) 1671 WP_014306019.1 arginine--tRNA ligase -
  SBK94_RS18370 (SBK94_18370) - 3676908..3677336 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  SBK94_RS18375 (SBK94_18375) rapF 3677628..3678773 (+) 1146 WP_014306020.1 tetratricopeptide repeat protein Regulator
  SBK94_RS18380 (SBK94_18380) - 3678757..3678876 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  SBK94_RS18385 (SBK94_18385) - 3679075..3679278 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  SBK94_RS18390 (SBK94_18390) - 3679292..3679495 (+) 204 WP_003151062.1 hypothetical protein -
  SBK94_RS18400 (SBK94_18400) - 3679903..3680184 (+) 282 WP_014306021.1 hypothetical protein -
  SBK94_RS18405 (SBK94_18405) - 3680228..3680740 (+) 513 WP_003151059.1 stage II sporulation protein M -
  SBK94_RS18410 (SBK94_18410) - 3681331..3681549 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  SBK94_RS18415 (SBK94_18415) speB 3681719..3682591 (-) 873 WP_003151054.1 agmatinase -
  SBK94_RS18420 (SBK94_18420) speE 3682651..3683481 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45617.80 Da        Isoelectric Point: 4.6084

>NTDB_id=901139 SBK94_RS18375 WP_014306020.1 3677628..3678773(+) (rapF) [Bacillus velezensis strain N23]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLEYLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=901139 SBK94_RS18375 WP_014306020.1 3677628..3678773(+) (rapF) [Bacillus velezensis strain N23]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATATTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567