Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   SBK94_RS13350 Genome accession   NZ_CP137889
Coordinates   2711321..2712073 (-) Length   250 a.a.
NCBI ID   WP_014305514.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2706321..2717073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS13325 (SBK94_13325) mreC 2706757..2707620 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  SBK94_RS13330 (SBK94_13330) mreB 2707651..2708664 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  SBK94_RS13335 (SBK94_13335) radC 2708756..2709451 (-) 696 WP_003152646.1 DNA repair protein RadC -
  SBK94_RS13340 (SBK94_13340) - 2709483..2710052 (-) 570 WP_014305513.1 nucleoside triphosphate pyrophosphatase -
  SBK94_RS13345 (SBK94_13345) - 2710193..2711194 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  SBK94_RS13350 (SBK94_13350) comC 2711321..2712073 (-) 753 WP_014305514.1 A24 family peptidase Machinery gene
  SBK94_RS13355 (SBK94_13355) - 2712213..2713505 (-) 1293 WP_014305515.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SBK94_RS13360 (SBK94_13360) - 2713564..2716206 (-) 2643 WP_014305516.1 valine--tRNA ligase -
  SBK94_RS13365 (SBK94_13365) - 2716659..2716850 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27124.75 Da        Isoelectric Point: 9.2521

>NTDB_id=901122 SBK94_RS13350 WP_014305514.1 2711321..2712073(-) (comC) [Bacillus velezensis strain N23]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLALIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=901122 SBK94_RS13350 WP_014305514.1 2711321..2712073(-) (comC) [Bacillus velezensis strain N23]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGTTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGCGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588