Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SBK94_RS07490 Genome accession   NZ_CP137889
Coordinates   1409600..1410196 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404600..1415196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS07460 (SBK94_07460) - 1404814..1405269 (+) 456 WP_014304922.1 flavodoxin -
  SBK94_RS07465 (SBK94_07465) dapD 1405351..1406061 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SBK94_RS07470 (SBK94_07470) - 1406132..1407256 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  SBK94_RS07475 (SBK94_07475) - 1407317..1407562 (+) 246 WP_003154596.1 YkuS family protein -
  SBK94_RS07480 (SBK94_07480) - 1407596..1408402 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  SBK94_RS07485 (SBK94_07485) - 1408690..1409148 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  SBK94_RS07490 (SBK94_07490) rok 1409600..1410196 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  SBK94_RS07495 (SBK94_07495) - 1410217..1411209 (-) 993 WP_014304925.1 hypothetical protein -
  SBK94_RS07500 (SBK94_07500) - 1411355..1411957 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  SBK94_RS07505 (SBK94_07505) - 1412009..1413028 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  SBK94_RS07510 (SBK94_07510) glp 1413046..1414338 (+) 1293 WP_014304926.1 gephyrin-like molybdotransferase Glp -
  SBK94_RS07515 (SBK94_07515) mobB 1414299..1414820 (+) 522 WP_041481858.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=901097 SBK94_RS07490 WP_003154591.1 1409600..1410196(+) (rok) [Bacillus velezensis strain N23]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=901097 SBK94_RS07490 WP_003154591.1 1409600..1410196(+) (rok) [Bacillus velezensis strain N23]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843