Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   SBK94_RS01740 Genome accession   NZ_CP137889
Coordinates   319694..320092 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 314694..325092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS01710 (SBK94_01710) - 315694..315858 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  SBK94_RS01715 (SBK94_01715) - 315972..317174 (+) 1203 WP_014304313.1 GTP-binding protein -
  SBK94_RS01720 (SBK94_01720) - 317239..318375 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  SBK94_RS01725 (SBK94_01725) - 318390..318824 (+) 435 WP_003156592.1 RDD family protein -
  SBK94_RS01730 (SBK94_01730) - 318941..319216 (+) 276 WP_371745793.1 YckD family protein -
  SBK94_RS20100 - 319320..319403 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  SBK94_RS01735 (SBK94_01735) - 319435..319653 (+) 219 Protein_302 family 1 glycosylhydrolase -
  SBK94_RS01740 (SBK94_01740) nin/comJ 319694..320092 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  SBK94_RS01745 (SBK94_01745) nucA/comI 320114..320551 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SBK94_RS01750 (SBK94_01750) hxlB 320910..321467 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  SBK94_RS01755 (SBK94_01755) hxlA 321464..322099 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  SBK94_RS01760 (SBK94_01760) - 322331..322693 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=901073 SBK94_RS01740 WP_014304317.1 319694..320092(-) (nin/comJ) [Bacillus velezensis strain N23]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=901073 SBK94_RS01740 WP_014304317.1 319694..320092(-) (nin/comJ) [Bacillus velezensis strain N23]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758