Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SA286_RS15185 Genome accession   NZ_CP137888
Coordinates   2924988..2925629 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ECC22     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2919988..2930629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS15150 (SA286_15150) - 2921116..2921547 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  SA286_RS15155 (SA286_15155) - 2921547..2921888 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  SA286_RS15160 (SA286_15160) - 2921881..2923359 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  SA286_RS15165 (SA286_15165) - 2923366..2923845 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  SA286_RS15170 (SA286_15170) - 2923845..2924126 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  SA286_RS15175 (SA286_15175) mnhG 2924110..2924484 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  SA286_RS15180 (SA286_15180) - 2924575..2924964 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  SA286_RS15185 (SA286_15185) comA 2924988..2925629 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  SA286_RS15190 (SA286_15190) comP 2925710..2928022 (-) 2313 WP_041507704.1 ATP-binding protein Regulator
  SA286_RS15195 (SA286_15195) comX 2928076..2928246 (-) 171 WP_074041927.1 competence pheromone ComX -
  SA286_RS15200 (SA286_15200) - 2928243..2929157 (-) 915 WP_041507705.1 polyprenyl synthetase family protein -
  SA286_RS15205 (SA286_15205) degQ 2929309..2929449 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  SA286_RS15210 (SA286_15210) - 2929955..2930308 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=901052 SA286_RS15185 WP_007500477.1 2924988..2925629(-) (comA) [Bacillus altitudinis strain ECC22]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=901052 SA286_RS15185 WP_007500477.1 2924988..2925629(-) (comA) [Bacillus altitudinis strain ECC22]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCACAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718