Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SA286_RS11790 Genome accession   NZ_CP137888
Coordinates   2295681..2296751 (-) Length   356 a.a.
NCBI ID   WP_024718839.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ECC22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2290681..2301751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS11740 (SA286_11740) sipW 2290776..2291348 (-) 573 WP_017357979.1 signal peptidase I SipW -
  SA286_RS11745 (SA286_11745) tapA 2291398..2291925 (-) 528 WP_061419578.1 amyloid fiber anchoring/assembly protein TapA -
  SA286_RS11750 (SA286_11750) - 2292178..2292504 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  SA286_RS11755 (SA286_11755) - 2292539..2292733 (-) 195 WP_008342191.1 YqzE family protein -
  SA286_RS11760 (SA286_11760) - 2292794..2293177 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  SA286_RS11765 (SA286_11765) comGF 2293174..2293671 (-) 498 WP_041506957.1 competence type IV pilus minor pilin ComGF -
  SA286_RS11770 (SA286_11770) comGE 2293613..2293927 (-) 315 WP_041506956.1 competence type IV pilus minor pilin ComGE -
  SA286_RS11775 (SA286_11775) comGD 2293911..2294357 (-) 447 WP_041506955.1 competence type IV pilus minor pilin ComGD -
  SA286_RS11780 (SA286_11780) comGC 2294350..2294643 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  SA286_RS11785 (SA286_11785) comGB 2294660..2295700 (-) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  SA286_RS11790 (SA286_11790) comGA 2295681..2296751 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  SA286_RS11795 (SA286_11795) - 2297208..2298080 (-) 873 WP_041506953.1 STAS domain-containing protein -
  SA286_RS11805 (SA286_11805) - 2298305..2298685 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  SA286_RS11810 (SA286_11810) - 2298898..2299140 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  SA286_RS11815 (SA286_11815) - 2299189..2299827 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  SA286_RS11820 (SA286_11820) - 2299988..2300161 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  SA286_RS11825 (SA286_11825) - 2300186..2300500 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40366.72 Da        Isoelectric Point: 9.0449

>NTDB_id=901042 SA286_RS11790 WP_024718839.1 2295681..2296751(-) (comGA) [Bacillus altitudinis strain ECC22]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=901042 SA286_RS11790 WP_024718839.1 2295681..2296751(-) (comGA) [Bacillus altitudinis strain ECC22]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCAGAAACAGCGAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGGTTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649