Detailed information NTG0090103

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDP65_RS17515
• Genome accession: NZ_AP025152
• Coordinates: 3889573..3890577 (+)
• Length: 334 a.a.
• NCBI ID: WP_101114022.1
• Uniprot ID: A0AAV5NX12
• Organism: Vibrio penaeicida strain TUMSAT-OK1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3884573..3895577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDP65_RS17495	metJ	3884646..3884966 (+)	321	WP_101114045.1	met regulon transcriptional regulator MetJ	-
LDP65_RS17500	-	3885073..3886335 (-)	1263	WP_126609356.1	malic enzyme-like NAD(P)-binding protein	-
LDP65_RS17505	rpmE	3886603..3886818 (-)	216	WP_101114026.1	50S ribosomal protein L31	-
LDP65_RS17510	priA	3887121..3889322 (+)	2202	WP_126609355.1	primosomal protein N'	-
LDP65_RS17515	cytR	3889573..3890577 (+)	1005	WP_101114022.1	DNA-binding transcriptional regulator CytR	Regulator
LDP65_RS17520	-	3890688..3891224 (+)	537	WP_126609354.1	SPOR domain-containing protein	-
LDP65_RS17525	hslV	3891335..3891871 (+)	537	WP_101114019.1	ATP-dependent protease subunit HslV	-
LDP65_RS17530	hslU	3891885..3893216 (+)	1332	WP_126609353.1	HslU--HslV peptidase ATPase subunit	-
LDP65_RS17535	-	3893329..3894246 (+)	918	WP_126609352.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDP65_RS17540	rraA	3894324..3894848 (+)	525	WP_126609351.1	ribonuclease E activity regulator RraA	-
LDP65_RS17545	zapB	3895035..3895277 (-)	243	WP_101114015.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36485.94 Da
• Isoelectric Point: 6.6049

>NTDB_id=90103 LDP65_RS17515 WP_101114022.1 3889573..3890577(+) (cytR) [Vibrio penaeicida strain TUMSAT-OK1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVESAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDSYFTEIIRG
IEDVAVENGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHSKIAQISGPDDAALCQFRNQGYQQALRRAGITMNPTYKEMGDFTFESGHKAVTKLLSLPEPPTA
VFCHNDAMAIGAIKGAKAAGLKVPQDLSVVGFDDIQFAEFCDPPLTTITQPRYEIGRQAMLMLLEILKGRDVHAGSRLLE
THLKIRESAAPPRT

Nucleotide

• Length: 1005 bp

>NTDB_id=90103 LDP65_RS17515 WP_101114022.1 3889573..3890577(+) (cytR) [Vibrio penaeicida strain TUMSAT-OK1]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGAGTTTCTACTGCAACCGTATCACGAGCTCTGATGAACCCTGAGAA
GGTTTCATCTACTACGCGTAAACGTGTAGAGAGCGCCGTTTTGGAAGCTGGTTATTCACCGAATTCACTGGCAAGAAACT
TACGACGTAATGAATCCAAAACCATCGTTGCAATTGTACCTGACATCTGTGACTCCTATTTCACTGAGATCATTCGTGGC
ATTGAAGATGTAGCTGTGGAAAATGGATATCTCGTACTGTTGGGGGACAGCGGTCAGCAAAAGAAACGAGAAAGCTCGTT
GGTCAACTTGGTTTTCACTAAACAAGCCGATGGCATGTTGCTTTTGGGTACGCACTTGCCATTCGATGTCAGCAAACCGG
AACAAAAAAACCTGCCACCACTGGTGATGGCTTGTGAATTTGCACCGGAACTGGAATTGCCGACAGTCCATATTGATAAC
CTAACATCTTCTTTCGAGGCGGTGAACTATTTGACGCAAATGGGCCACTCCAAGATTGCTCAGATTTCAGGGCCAGACGA
TGCTGCGCTTTGCCAGTTTAGAAACCAAGGGTATCAGCAAGCGCTGAGAAGAGCTGGCATAACGATGAACCCCACTTATA
AAGAGATGGGAGATTTCACCTTTGAGTCTGGTCACAAGGCAGTCACCAAATTGCTTTCGTTACCAGAGCCACCAACCGCT
GTTTTCTGTCATAACGACGCCATGGCAATTGGAGCAATCAAAGGAGCAAAAGCCGCAGGATTAAAAGTACCTCAAGATTT
ATCCGTTGTAGGCTTCGATGATATTCAGTTTGCTGAATTCTGCGACCCTCCACTAACGACCATCACGCAGCCACGCTATG
AAATCGGTCGACAAGCCATGCTGATGCTGCTTGAAATCTTGAAAGGTCGTGACGTTCACGCAGGTTCACGCCTGTTGGAA
ACACACTTGAAAATCCGAGAAAGCGCCGCTCCACCAAGAACTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	86.145	99.401	0.856
cytR	Vibrio parahaemolyticus RIMD 2210633	83.784	99.701	0.835