Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SA286_RS05140 Genome accession   NZ_CP137888
Coordinates   1030954..1031532 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain ECC22     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025954..1036532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS05120 (SA286_05120) - 1026447..1027808 (-) 1362 WP_370539267.1 globin-coupled sensor protein -
  SA286_RS05125 (SA286_05125) - 1027834..1029366 (-) 1533 WP_324657849.1 FAD-dependent oxidoreductase -
  SA286_RS05130 (SA286_05130) - 1029509..1030369 (+) 861 WP_046343106.1 SDR family oxidoreductase -
  SA286_RS05135 (SA286_05135) - 1030434..1030664 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  SA286_RS05140 (SA286_05140) comK 1030954..1031532 (+) 579 WP_017366958.1 competence protein ComK Regulator
  SA286_RS05145 (SA286_05145) - 1031676..1032782 (+) 1107 WP_100325419.1 D-TA family PLP-dependent enzyme -
  SA286_RS05150 (SA286_05150) - 1033169..1033651 (+) 483 WP_007499155.1 hypothetical protein -
  SA286_RS05155 (SA286_05155) - 1033682..1035121 (-) 1440 WP_173407929.1 PLP-dependent aminotransferase family protein -
  SA286_RS05160 (SA286_05160) - 1035265..1036434 (+) 1170 WP_081114756.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=901016 SA286_RS05140 WP_017366958.1 1030954..1031532(+) (comK) [Bacillus altitudinis strain ECC22]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=901016 SA286_RS05140 WP_017366958.1 1030954..1031532(+) (comK) [Bacillus altitudinis strain ECC22]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCACACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615