Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   SA286_RS01940 Genome accession   NZ_CP137888
Coordinates   371142..371570 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain ECC22     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366142..376570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA286_RS01910 (SA286_01910) - 366287..366616 (+) 330 WP_024718960.1 YckD family protein -
  SA286_RS01915 (SA286_01915) - 366663..367427 (-) 765 WP_039166305.1 MBL fold metallo-hydrolase -
  SA286_RS01920 (SA286_01920) - 367543..367962 (+) 420 WP_324657716.1 Lrp/AsnC family transcriptional regulator -
  SA286_RS01925 (SA286_01925) - 367987..368793 (+) 807 WP_024718957.1 aminoglycoside N(3)-acetyltransferase -
  SA286_RS01930 (SA286_01930) comJ 368795..369181 (-) 387 WP_039166300.1 competence protein ComJ -
  SA286_RS01935 (SA286_01935) - 369318..371015 (-) 1698 WP_041508229.1 methyl-accepting chemotaxis protein -
  SA286_RS01940 (SA286_01940) nucA/comI 371142..371570 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SA286_RS01945 (SA286_01945) - 371939..374008 (+) 2070 WP_324657718.1 hydantoinase/oxoprolinase family protein -
  SA286_RS01950 (SA286_01950) - 373998..375983 (+) 1986 WP_045034597.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=901010 SA286_RS01940 WP_007498233.1 371142..371570(-) (nucA/comI) [Bacillus altitudinis strain ECC22]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=901010 SA286_RS01940 WP_007498233.1 371142..371570(-) (nucA/comI) [Bacillus altitudinis strain ECC22]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAACACA
TAGAAGAAGCAATTGATGAAGGGCATTCTTCCATTTGCACCATTGATCGGAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514