Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   HK937_RS03335 Genome accession   NZ_CP137883
Coordinates   633969..634406 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628969..639406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS03310 (HK937_0003310) - 629590..630612 (+) 1023 Protein_640 sensor histidine kinase KdpD -
  HK937_RS03315 (HK937_0003315) - 630636..631388 (+) 753 WP_224385644.1 DUF4118 domain-containing protein -
  HK937_RS03320 (HK937_0003320) uvrB 631383..633356 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  HK937_RS03325 (HK937_0003325) - 633510..633740 (+) 231 WP_002852327.1 hypothetical protein -
  HK937_RS03330 (HK937_0003330) - 633730..633972 (+) 243 WP_002854947.1 hypothetical protein -
  HK937_RS03335 (HK937_0003335) Cj0683 633969..634406 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HK937_RS03340 (HK937_0003340) priA 634388..636241 (+) 1854 WP_002856756.1 primosomal protein N' -
  HK937_RS03345 (HK937_0003345) cipA 636251..637645 (-) 1395 WP_002896028.1 DUF2972 domain-containing protein -
  HK937_RS03350 (HK937_0003350) ispG 637791..638864 (+) 1074 WP_002857157.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=900954 HK937_RS03335 WP_002852324.1 633969..634406(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain P4549]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=900954 HK937_RS03335 WP_002852324.1 633969..634406(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain P4549]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1