Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   LDP65_RS16555 Genome accession   NZ_AP025152
Coordinates   3663192..3664178 (-) Length   328 a.a.
NCBI ID   WP_126607373.1    Uniprot ID   A0AAV5NUA8
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3658192..3669178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS16540 - 3658859..3659503 (-) 645 WP_224055258.1 DUF1449 domain-containing protein -
  LDP65_RS16545 mutS 3659881..3662412 (+) 2532 WP_126607375.1 DNA mismatch repair protein MutS -
  LDP65_RS16550 - 3662483..3663001 (-) 519 WP_126607374.1 hypothetical protein -
  LDP65_RS16555 rpoS 3663192..3664178 (-) 987 WP_126607373.1 RNA polymerase sigma factor RpoS Regulator
  LDP65_RS16560 - 3664238..3665170 (-) 933 WP_126607372.1 peptidoglycan DD-metalloendopeptidase family protein -
  LDP65_RS16565 - 3665181..3665807 (-) 627 WP_101112509.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  LDP65_RS16570 surE 3665808..3666554 (-) 747 WP_126607371.1 5'/3'-nucleotidase SurE -
  LDP65_RS16575 truD 3666853..3667905 (-) 1053 WP_126606189.1 tRNA pseudouridine(13) synthase TruD -
  LDP65_RS16580 ispF 3667909..3668385 (-) 477 WP_104401358.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LDP65_RS16585 ispD 3668396..3669121 (-) 726 WP_126606190.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37657.75 Da        Isoelectric Point: 4.6996

>NTDB_id=90093 LDP65_RS16555 WP_126607373.1 3663192..3664178(-) (rpoS) [Vibrio penaeicida strain TUMSAT-OK1]
MSISNAVTKVEEEFEVEAVAMEQPSAETRALTPEKQSEQKEDFEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDINNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide


Download         Length: 987 bp        

>NTDB_id=90093 LDP65_RS16555 WP_126607373.1 3663192..3664178(-) (rpoS) [Vibrio penaeicida strain TUMSAT-OK1]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGAAGTTGAAGCGGTTGCAATGGAACAACCTTCCGCAGA
AACAAGAGCTCTGACACCTGAAAAACAATCTGAGCAAAAAGAAGACTTTGAAGTCACGTCGAAAAGCTTAGATGCCACTC
AACTTTACCTAGGAGAGATTGGTTTTTCTCCACTGCTTACGGCCGAAGAAGAAGTTTTGTATGCGCGTCGCGCACTTCGC
GGTGACGAAGCTGCCCGCAAACGAATGATCGAAAGTAACCTGCGATTAGTTGTGAAAATTTCACGCCGTTACGGTAACCG
TGGTCTTGCGCTACTCGATCTTATCGAAGAGGGTAATTTAGGTTTAATCCGTGCAGTAGAGAAATTTGATCCAGAGAGAG
GTTTCCGATTCTCAACTTACGCAACTTGGTGGATCCGTCAAACCATTGAACGGGCGTTGATGAATCAAACAAGAACCATC
CGACTGCCTATTCACGTAGTAAAAGAGCTGAATATTTATCTCAGAACAGCTCGAGAGCTTTCTCAGAAGCTTGATCACGA
ACCGACGGCTGAAGAAATCGCACAAAAACTTGATAAACCTGTTGATGACGTGAGTAAGATGCTTCGTCTTAACGAGAGAG
TCAGTTCTGTGGATACGCCAATTGGCGGTGAAAGTGAAAAAGCACTACTCGACATCATTCCAGACATCAATAACTCTGAT
CCTGAAGTTTGTACGCAGGATGACGATATAAAACATTCTTTAATTGACTGGCTTGATGACCTGAATCCTAAGCAGAAAGA
AGTGCTTGCACGACGTTTTGGTCTTCTTGGCTATGAACCATCCACTTTGGAAGAAGTGGGACGAGAAATCAATCTAACTC
GTGAGCGCGTTCGTCAGATCCAAGTAGAAGGGCTTCGCCGCTTAAGAGAGATCTTAGTGAAACAAGGTCTGAACATGGAA
TCGCTATTTAATGTCGAAAACGACTAG

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

82.635

100

0.841

Multiple sequence alignment