Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R9X41_RS00855 Genome accession   NZ_CP137854
Coordinates   179284..180855 (+) Length   523 a.a.
NCBI ID   WP_318633020.1    Uniprot ID   -
Organism   Xylophilus sp. GOD-11R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174284..185855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9X41_RS00830 (R9X41_00830) argS 174396..176081 (+) 1686 WP_318633015.1 arginine--tRNA ligase -
  R9X41_RS00835 (R9X41_00835) - 176102..176824 (+) 723 WP_318633016.1 SPOR domain-containing protein -
  R9X41_RS00840 (R9X41_00840) - 176873..177550 (+) 678 WP_318633017.1 thiol:disulfide interchange protein DsbA/DsbL -
  R9X41_RS00845 (R9X41_00845) lptA 177733..178389 (+) 657 WP_318633018.1 lipopolysaccharide transport periplasmic protein LptA -
  R9X41_RS00850 (R9X41_00850) lptB 178398..179177 (+) 780 WP_318633019.1 LPS export ABC transporter ATP-binding protein -
  R9X41_RS00855 (R9X41_00855) rpoN/rpoN1 179284..180855 (+) 1572 WP_318633020.1 RNA polymerase factor sigma-54 Machinery gene
  R9X41_RS00860 (R9X41_00860) - 181141..181788 (-) 648 WP_318633021.1 DUF4197 domain-containing protein -
  R9X41_RS00865 (R9X41_00865) - 181873..183111 (+) 1239 WP_318633022.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  R9X41_RS00870 (R9X41_00870) - 183114..183569 (+) 456 WP_318633023.1 PIN domain-containing protein -
  R9X41_RS00875 (R9X41_00875) - 183583..185454 (-) 1872 WP_318633024.1 FUSC family protein -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 57311.64 Da        Isoelectric Point: 4.7377

>NTDB_id=900907 R9X41_RS00855 WP_318633020.1 179284..180855(+) (rpoN/rpoN1) [Xylophilus sp. GOD-11R]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLEVTHEEAAREEFGVAQADTPATAAEEEGFYAGA
ENTASTATTSEASGDGDGDGGVESEPSWEGDGGTEVVADDGEWGGDAPARQNNLGEDGEVDATELARSQESLTAFLHRQA
LALRLSPEDSAALRFLIESLNDDGYLEDSLPSLALGLAGHGDDAMEEVEDLVQRFTVALRLLQHLEPAGVGARDLRECLT
LQLRAMRETGVGQPALVAAALAICAHPMELLARRDVKRLTAACNLDEETVRAAMGLIARLEPKPGRRFVDVERNIVIPDV
LVQKIGRGPQPRFRVQLNPDVMPRLKVHDIYASALKQHKGEGSAALQQRLQEARWFIKNIQQRFDTILRVSNAIVERQKN
FFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTFELKYFFGSALGTETGGNASSTAVRALIKQFVSSEDL
RKPLSDSQISDMLKEQGIECARRTVAKYRDALRIAPANLRKSL

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=900907 R9X41_RS00855 WP_318633020.1 179284..180855(+) (rpoN/rpoN1) [Xylophilus sp. GOD-11R]
TTGAAACAAGGGCTTTCTCTTCGCGTTTCGCAGCATCTGGCGCTCACGCCGCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTGTCGACGCTGGAGCTGAGCCAGGAGGTCGAGCAGATGCTCGACGAGAACCCTTTCCTCGAAGTCACCCACGAGGAAG
CCGCGCGCGAGGAATTCGGCGTGGCGCAGGCCGACACGCCTGCGACGGCGGCGGAAGAGGAAGGCTTCTACGCCGGCGCC
GAGAACACCGCCAGCACCGCCACCACTAGCGAAGCCTCGGGCGACGGCGACGGTGACGGTGGTGTCGAATCCGAGCCCAG
CTGGGAAGGCGACGGCGGCACCGAAGTCGTCGCCGACGACGGCGAATGGGGCGGCGACGCGCCCGCCCGCCAGAACAACC
TGGGCGAAGACGGCGAGGTCGACGCCACCGAACTGGCGCGCAGCCAGGAGTCGCTCACCGCCTTCCTGCACCGACAGGCG
CTGGCCCTGCGCCTGTCGCCCGAAGACAGCGCGGCGCTGCGATTCCTGATCGAATCGCTCAACGACGACGGCTACCTGGA
GGACTCGCTGCCGTCGCTGGCCCTGGGCCTCGCCGGCCACGGCGACGACGCGATGGAGGAGGTCGAGGACCTGGTTCAGC
GCTTTACCGTCGCCCTGCGCCTGCTGCAACACCTGGAGCCCGCCGGCGTCGGCGCGCGCGATCTGCGCGAATGTCTCACG
CTGCAATTGCGCGCTATGCGCGAAACCGGCGTCGGACAGCCGGCGCTGGTCGCCGCCGCACTGGCGATCTGCGCGCATCC
CATGGAATTGCTGGCCCGCCGCGACGTCAAGCGCCTGACGGCCGCCTGCAACCTCGACGAGGAAACCGTGCGCGCGGCCA
TGGGCCTGATCGCCCGGCTCGAACCCAAGCCCGGCCGGCGTTTCGTCGATGTCGAACGCAACATCGTCATACCGGACGTG
CTGGTGCAAAAGATCGGCCGCGGACCGCAACCGCGCTTTCGCGTACAGCTCAACCCCGACGTGATGCCGCGCCTGAAGGT
GCACGACATCTACGCCAGCGCGCTCAAGCAGCACAAGGGCGAAGGCAGCGCCGCCCTGCAGCAGCGGCTGCAGGAAGCGC
GCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGGGTGTCCAACGCCATCGTCGAGCGGCAGAAGAAC
TTCTTCGTGCACGGCGAACTGGCCATGCGACCGCTGGTGCTGCGCGAGATCGCCGATGAACTCGGCCTGCACGAATCCAC
CATCAGCCGGGTGACCACGGCCAAGTACATGTCGACGCCCTTCGGCACTTTCGAGCTCAAGTACTTCTTCGGCTCCGCTC
TGGGCACCGAAACCGGCGGCAACGCGTCAAGCACCGCGGTGCGGGCGCTGATCAAGCAGTTCGTCAGCTCGGAAGACCTG
CGCAAGCCGCTGTCGGACAGCCAGATCTCCGACATGCTCAAGGAGCAGGGCATCGAATGCGCGCGCCGCACGGTGGCCAA
GTACCGTGACGCGCTGCGCATCGCACCGGCCAATCTGCGCAAGTCGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-351)

Sigma-54, DNA binding domain (Sigma54_DBD)

(365-521)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.008

100

0.539