Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDP65_RS16405 Genome accession   NZ_AP025152
Coordinates   3630905..3631423 (-) Length   172 a.a.
NCBI ID   WP_101112486.1    Uniprot ID   -
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3625905..3636423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS16390 - 3627206..3628000 (+) 795 WP_126606896.1 inner membrane protein YpjD -
  LDP65_RS16395 - 3628100..3629365 (+) 1266 WP_101112484.1 HlyC/CorC family transporter -
  LDP65_RS16400 - 3629580..3630815 (+) 1236 WP_126606895.1 YbiU family protein -
  LDP65_RS16405 luxS 3630905..3631423 (-) 519 WP_101112486.1 S-ribosylhomocysteine lyase Regulator
  LDP65_RS16410 - 3631448..3632053 (-) 606 WP_101112487.1 hypothetical protein -
  LDP65_RS16415 gshA 3632059..3633627 (-) 1569 WP_126606894.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18862.66 Da        Isoelectric Point: 4.8281

>NTDB_id=90090 LDP65_RS16405 WP_101112486.1 3630905..3631423(-) (luxS) [Vibrio penaeicida strain TUMSAT-OK1]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSNVEIIDISP
MGCRTGFYMSLIGTPTESQVAEAWLAAMKDVLKVESQNQIPELNEYQCGTADMHSLDEAKAIATAIIDAGIAVNKNDELA
LPESMLKELSIK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=90090 LDP65_RS16405 WP_101112486.1 3630905..3631423(-) (luxS) [Vibrio penaeicida strain TUMSAT-OK1]
ATGCCATTACTAGATAGTTTCACCGTTGATCACACTAAGATGAACGCTCCTGCGGTTCGCGTGGCGAAAACCATGCAGAC
GCCAAAAGGGGACACGATCACTGTGTTTGATTTGCGATTCACCGCGCCTAACAAAGACATCCTTTCAGAAAGAGGCATAC
ATACGTTAGAGCACCTTTATGCGGGTTTCATGCGTGCGCATTTGAATGGTTCTAATGTGGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACAGGTTTCTACATGAGTCTTATTGGCACGCCAACAGAATCTCAAGTAGCAGAAGCTTGGCTAGCAGC
AATGAAAGATGTGCTGAAGGTAGAGAGTCAAAATCAAATTCCAGAATTGAATGAATATCAGTGTGGGACTGCAGACATGC
ACTCTCTTGATGAAGCAAAAGCGATTGCGACTGCGATTATCGATGCTGGTATTGCTGTAAATAAAAACGATGAACTGGCG
TTGCCAGAGTCAATGTTAAAAGAACTTAGCATCAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment