Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DEGADCKI_RS15005 Genome accession   NZ_CP137819
Coordinates   2962590..2963291 (+) Length   233 a.a.
NCBI ID   WP_208061196.1    Uniprot ID   -
Organism   [Clostridium] scindens strain I10     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957590..2968291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEGADCKI_RS14980 (DEGADCKI_02974) - 2958003..2959565 (-) 1563 WP_039909761.1 ABC transporter substrate-binding protein -
  DEGADCKI_RS14985 (DEGADCKI_02975) - 2959888..2960181 (-) 294 WP_208061189.1 hypothetical protein -
  DEGADCKI_RS14990 (DEGADCKI_02976) - 2960196..2960966 (-) 771 WP_208061191.1 ABC transporter permease -
  DEGADCKI_RS14995 (DEGADCKI_02977) - 2960963..2961661 (-) 699 WP_208061193.1 ABC transporter permease -
  DEGADCKI_RS15000 (DEGADCKI_02978) - 2961658..2962413 (-) 756 WP_009248223.1 ABC transporter ATP-binding protein -
  DEGADCKI_RS15005 (DEGADCKI_02979) scnR 2962590..2963291 (+) 702 WP_208061196.1 response regulator transcription factor Regulator
  DEGADCKI_RS15010 (DEGADCKI_02980) - 2963295..2964695 (+) 1401 WP_208061198.1 sensor histidine kinase -
  DEGADCKI_RS15015 (DEGADCKI_02981) - 2964692..2964961 (-) 270 WP_082210544.1 cation:dicarboxylate symporter family transporter -
  DEGADCKI_RS15020 (DEGADCKI_02982) sdaAA 2964992..2965861 (-) 870 WP_039909763.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  DEGADCKI_RS15025 (DEGADCKI_02983) sdaAB 2965887..2966558 (-) 672 WP_004607396.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  DEGADCKI_RS15030 (DEGADCKI_02984) - 2966705..2967823 (+) 1119 WP_154323128.1 DUF4317 domain-containing protein -
  DEGADCKI_RS17840 - 2968129..2968269 (+) 141 Protein_2951 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26366.37 Da        Isoelectric Point: 4.7582

>NTDB_id=900807 DEGADCKI_RS15005 WP_208061196.1 2962590..2963291(+) (scnR) [[Clostridium] scindens strain I10]
MAFNYLKRKKILLVDDEPELLNMVTSILENEGYTNIKTASTASEAIDACKNFKPELAVLDVMLPDGNGFDLLRELKRISD
FPVLFLTARGEDEDKWTGFGRGADDYMVKPFLPKELTFRIMAILRRSYKNDAPLVILAESEIDFDRAEVRKAGDVLPLTA
KEYEILSSLYRNAGKIVTIDTLCEAAWGDNPYGYENSLMAHIRRIREKIEADPSHPVSLVTIKGLGYKLILEE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=900807 DEGADCKI_RS15005 WP_208061196.1 2962590..2963291(+) (scnR) [[Clostridium] scindens strain I10]
ATGGCTTTTAACTATCTCAAACGAAAAAAAATCCTTCTCGTCGATGACGAGCCGGAACTTCTGAATATGGTGACTTCCAT
TCTGGAAAATGAAGGCTATACGAATATAAAGACCGCATCGACTGCCTCCGAAGCCATCGATGCATGTAAGAATTTCAAGC
CGGAACTTGCGGTTCTCGACGTAATGCTTCCTGATGGAAATGGATTTGACTTGCTGCGGGAATTAAAAAGGATCTCTGAC
TTCCCGGTTCTGTTCTTGACCGCAAGAGGCGAGGATGAGGATAAATGGACGGGATTCGGACGCGGGGCCGATGATTACAT
GGTAAAGCCCTTCCTCCCCAAAGAGCTTACCTTCCGCATAATGGCTATACTAAGAAGAAGTTATAAAAATGACGCGCCAC
TGGTAATTCTTGCCGAAAGCGAGATAGATTTTGACCGGGCGGAAGTCCGAAAGGCTGGCGACGTCCTGCCTCTGACTGCC
AAAGAATATGAAATCTTAAGTTCCCTCTACCGCAACGCCGGAAAAATAGTGACCATTGATACGCTCTGCGAAGCCGCCTG
GGGGGATAATCCCTACGGCTATGAGAACTCTTTAATGGCTCATATCCGGCGTATCCGGGAGAAGATCGAGGCAGACCCTT
CCCATCCGGTTTCCCTGGTGACCATAAAAGGATTGGGATATAAACTGATTCTGGAGGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-119)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.78

97.425

0.485