Detailed information NTG0090072

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LDP65_RS03675
• Genome accession: NZ_AP025152
• Coordinates: 757950..761339 (-)
• Length: 1129 a.a.
• NCBI ID: WP_126609001.1
• Uniprot ID: A0AAV5NLQ3
• Organism: Vibrio penaeicida strain TUMSAT-OK1
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 752950..766339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDP65_RS03660	-	753203..754228 (-)	1026	WP_126607043.1	ABC transporter permease	-
LDP65_RS03665	-	754231..755217 (-)	987	WP_101113265.1	ABC transporter permease	-
LDP65_RS03670	-	755375..757054 (-)	1680	WP_101113264.1	ABC transporter substrate-binding protein	-
LDP65_RS03675	chiS	757950..761339 (-)	3390	WP_126609001.1	ATP-binding protein	Regulator
LDP65_RS03680	rsmC	761582..762607 (-)	1026	WP_126609002.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LDP65_RS03685	-	762698..763783 (-)	1086	WP_101113261.1	AI-2E family transporter	-
LDP65_RS03690	hemL	764020..765312 (-)	1293	WP_126609003.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LDP65_RS03695	erpA	765513..765854 (+)	342	WP_126609004.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127236.72 Da
• Isoelectric Point: 5.4859

>NTDB_id=90072 LDP65_RS03675 WP_126609001.1 757950..761339(-) (chiS) [Vibrio penaeicida strain TUMSAT-OK1]
MFKPNKKQKFKRLQHTLMVAFLVLSITPLTMIALFFLQSHSKDLQEQSTSHLLSVRDTKKQQLLDYFEAKESEVMGFVRS
ELAYNSGGRFYGLINAFNNLGETIEQARDYAQQRYIQGSGDQIKTSVLPESEDYQGSERYRLMHKRYHRRYVDLLKRSDF
DDILLVDMDGNVVYSLNKYDNYGTNLNTGKYSESNLGKTFNALKEKVRKHKDNQDFTPIAMSDFALEGNEHVAWFAAPIV
QHEYLHSYALFRLPSTKLLSLFEDAATSKTIKAFLVGEDKAARIFNVSQEEIDESAEIIELALNDQTSVKTFVNTSGENI
IAAFTNIQIQNIEWALVAERTEAEAFARIQQLEKVFVVAMFIAIILVVICSHYLSNFITSPLLKLTWSAERVSAGDLDEV
MFETKRKDEIGRLGVSFQRMQRSIREKILTIKSQNEELEAHLKVIQTQNDELQLANKLKDEFLATTSHELRTPLHGMVGI
AEALISGANGPIPANQKHQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIQASAVNLSSSTRLVLELSQHLLGNKSIRII
NQVPMDLPLVSADPQRIEQVLYNLIGNAIKYTSEGKIVISATVLDEKLRVQVVDTGQGIPAEQLEHIFEPLIQAGQDSSR
YRQGAGLGLSISRQLIELMGGTLYVSSQPLVGTTFSFSLPLASEEEISISKQLGTTQSHFQAPDSSDSAKLDENSLPENP
DGPLIVVADDEPVNLQILDSFLKMEGYRVKTAKDGTEALELVQQEKPELLLLDVMMPGLSGYQVCEQVRLSYDHSELPVI
MLTALSQTNDRIKGFDSGANDYLTKPFNKLELASRIKAHLAAGKAELRRIENDKLQAELKQRALVEANLLETQGRLLEQL
ESAPEAILCLRDDGRIRFANEAAAKLFKRTQEQLKRSNGDEVIAPKYLNLQEDHFCGGIDVYVDDRRDHISADVLKLPEG
SDIHYMYIFNVGGGLNAARINNLETAVEALSSYAFEGDKGKLQQLKELGGEFTRIADKVSGRGGDKQELMREILVDSMTT
AIDYWESETGQTKFSFAEQSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVINSIEFILEHCHTPSGQREKLITLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=90072 LDP65_RS03675 WP_126609001.1 757950..761339(-) (chiS) [Vibrio penaeicida strain TUMSAT-OK1]
ATGTTTAAACCTAATAAAAAACAAAAATTTAAACGTCTTCAGCACACGTTGATGGTGGCTTTTCTCGTTTTGAGCATCAC
GCCACTGACTATGATCGCGCTGTTTTTTCTCCAGTCCCATAGTAAAGATTTACAAGAACAAAGTACGTCTCACCTCCTTT
CAGTTCGAGATACAAAAAAACAACAGTTACTCGATTATTTCGAAGCCAAAGAGTCTGAGGTGATGGGCTTTGTCCGTTCT
GAACTGGCGTACAATAGCGGAGGAAGGTTCTACGGTTTAATAAATGCTTTCAATAACTTGGGCGAGACCATTGAGCAAGC
CCGAGACTATGCACAACAGCGTTATATACAAGGTTCTGGCGATCAAATAAAAACGTCGGTGTTACCAGAGTCCGAAGACT
ATCAGGGTAGTGAGCGCTACCGATTAATGCACAAACGCTATCACCGCCGCTACGTTGATTTGCTGAAACGTAGCGATTTT
GACGATATTTTATTAGTAGATATGGATGGTAATGTCGTTTATTCCCTTAATAAATATGACAATTATGGTACTAATCTAAA
TACCGGAAAATACAGTGAAAGCAATCTAGGCAAAACTTTTAACGCGTTAAAAGAAAAAGTTAGAAAGCACAAAGACAACC
AAGATTTCACGCCTATCGCTATGTCGGACTTTGCTTTAGAAGGCAACGAACATGTTGCGTGGTTTGCCGCCCCCATTGTG
CAACATGAATACTTACACAGTTACGCGCTATTTCGTTTGCCGAGCACCAAACTTTTGTCGCTGTTTGAAGATGCTGCAAC
GAGTAAAACCATCAAAGCTTTCTTAGTTGGTGAAGATAAAGCAGCTCGTATTTTTAACGTATCTCAAGAAGAAATTGACG
AAAGTGCCGAGATTATCGAGCTTGCATTAAACGATCAAACATCAGTAAAAACCTTTGTAAACACCTCTGGCGAAAACATT
ATTGCCGCATTTACGAATATTCAAATCCAAAACATTGAATGGGCATTAGTTGCTGAGCGTACAGAAGCAGAAGCTTTTGC
GCGAATACAACAGCTTGAAAAAGTGTTTGTGGTCGCCATGTTTATCGCCATTATCTTGGTGGTGATTTGTTCACATTATT
TGTCTAATTTTATTACCTCCCCTCTTCTCAAGCTAACTTGGTCTGCAGAACGAGTGTCGGCAGGTGATCTTGATGAAGTG
ATGTTTGAAACCAAACGTAAAGATGAAATCGGCAGGTTAGGTGTCAGCTTCCAGCGGATGCAGCGCTCAATACGCGAGAA
AATTCTAACGATCAAATCTCAGAATGAAGAGCTTGAAGCGCACTTGAAGGTGATTCAGACCCAAAATGATGAATTGCAAC
TCGCCAACAAGTTAAAAGATGAATTTCTGGCAACAACTTCGCATGAATTGAGAACACCACTACACGGAATGGTCGGTATT
GCCGAGGCTCTCATCAGTGGCGCAAACGGTCCTATCCCAGCCAATCAGAAACACCAACTCGACATCATCATTAACAGCGG
TCAGCGGCTGGCGACTTTGGTTGATGACTTGCTCGATTACCATAAGATGCGCTATGGCAGCCTAGATATTCAAGCCTCCG
CGGTAAACTTATCCTCGTCGACTCGACTTGTTTTGGAATTATCTCAGCATTTGTTGGGGAACAAATCCATTCGCATCATT
AATCAAGTCCCAATGGATCTTCCTTTGGTTTCCGCAGATCCTCAGCGCATTGAGCAAGTACTTTACAACCTAATCGGTAA
TGCTATTAAGTACACGTCGGAAGGTAAAATCGTTATTTCCGCGACCGTACTCGACGAGAAACTTAGAGTACAAGTTGTCG
ATACCGGTCAAGGTATACCGGCAGAACAGCTTGAACATATATTCGAACCCTTGATTCAAGCAGGACAAGACTCTAGTCGC
TATCGACAAGGCGCAGGGCTAGGACTATCGATTAGCCGCCAGTTAATTGAACTGATGGGTGGAACGCTGTATGTCAGTAG
CCAACCTTTAGTAGGCACCACATTCAGTTTCTCGCTACCTTTAGCCTCTGAAGAAGAGATTTCGATATCCAAACAACTGG
GGACAACACAAAGCCACTTTCAGGCACCCGATAGTTCGGACAGTGCCAAACTGGATGAAAACTCACTACCTGAAAACCCA
GACGGTCCACTGATTGTCGTTGCTGATGATGAACCAGTGAACCTACAGATTCTGGACAGCTTCCTAAAAATGGAAGGCTA
TAGAGTTAAAACAGCAAAAGATGGGACTGAAGCATTAGAATTGGTTCAGCAAGAGAAGCCTGAGCTGCTCCTTTTAGACG
TTATGATGCCAGGCTTAAGCGGGTATCAAGTATGTGAGCAAGTCAGGTTGAGTTATGACCACTCAGAGTTACCTGTCATC
ATGCTTACCGCTTTAAGTCAAACTAACGACAGAATCAAAGGCTTTGATAGCGGTGCCAATGACTATCTCACTAAGCCATT
CAACAAATTAGAACTAGCATCGCGTATTAAAGCTCACCTTGCTGCAGGTAAAGCAGAGCTAAGGCGAATTGAAAATGACA
AACTTCAGGCTGAATTAAAGCAGCGTGCACTTGTAGAGGCAAACTTGCTTGAAACACAAGGTAGGCTGCTTGAGCAATTA
GAATCAGCTCCCGAAGCTATTCTCTGTCTGCGGGATGATGGTCGAATCCGTTTCGCAAATGAAGCAGCAGCAAAACTGTT
TAAACGGACACAAGAGCAACTTAAACGCTCTAATGGCGATGAAGTTATCGCACCTAAATACCTCAATCTTCAGGAAGACC
ACTTCTGCGGCGGTATTGATGTATATGTCGATGATCGACGCGACCACATTTCTGCGGATGTCCTTAAGCTCCCAGAAGGC
TCTGATATCCACTATATGTATATCTTCAATGTTGGTGGCGGCTTGAACGCAGCCAGAATTAACAACCTAGAAACCGCCGT
AGAGGCACTATCAAGCTACGCATTTGAAGGGGATAAAGGTAAGCTCCAACAGCTCAAAGAATTAGGCGGTGAATTTACAC
GTATCGCCGACAAAGTATCTGGGCGCGGTGGTGATAAACAGGAGCTAATGAGAGAAATCCTCGTCGATTCAATGACGACA
GCCATCGATTACTGGGAGTCTGAAACGGGTCAGACTAAGTTCTCTTTTGCGGAACAAAGCGGGCTGTGGCGTGTATACCT
AGACAGAAGTACACTTCAAACCCGAACTCTTGATAAGTATTTAAGGGTAGAAACACTACCAAAAACGCCTAGGTGGCGAA
CCGTCATTAACTCTATTGAGTTCATACTAGAGCATTGCCATACACCTAGTGGTCAACGTGAAAAGTTGATTACGCTAAGA
GACAAGCTGCAAAAACTTTTGACTTCGTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

• HAMP domain (HAMP) (374-426)

• Response regulator receiver domain (Response_reg) (725-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.15	100	0.712