Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R6Y98_RS19840 Genome accession   NZ_CP137767
Coordinates   3907137..3907574 (-) Length   145 a.a.
NCBI ID   WP_318588550.1    Uniprot ID   -
Organism   Bacillus cereus strain GUCC 3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3902137..3912574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y98_RS19825 (R6Y98_19825) - 3903309..3903868 (+) 560 Protein_3848 PadR family transcriptional regulator -
  R6Y98_RS19830 (R6Y98_19830) metE 3904382..3906673 (+) 2292 WP_318588465.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R6Y98_RS19835 (R6Y98_19835) comJ 3906712..3907100 (-) 389 Protein_3850 competence protein ComJ -
  R6Y98_RS19840 (R6Y98_19840) nucA/comI 3907137..3907574 (-) 438 WP_318588550.1 DNA-entry nuclease Machinery gene
  R6Y98_RS19845 (R6Y98_19845) - 3907797..3908534 (+) 738 Protein_3852 DUF3967 domain-containing protein -
  R6Y98_RS19850 (R6Y98_19850) kinB 3908585..3909862 (-) 1278 Protein_3853 sporulation sensor histidine kinase KinB -
  R6Y98_RS19855 (R6Y98_19855) - 3910173..3910373 (+) 201 WP_000929280.1 hypothetical protein -
  R6Y98_RS19860 (R6Y98_19860) - 3910496..3911659 (+) 1164 WP_000434601.1 aminotransferase A -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16150.48 Da        Isoelectric Point: 7.8853

>NTDB_id=900672 R6Y98_RS19840 WP_318588550.1 3907137..3907574(-) (nucA/comI) [Bacillus cereus strain GUCC 3]
MHEAKKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRR
KLSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=900672 R6Y98_RS19840 WP_318588550.1 3907137..3907574(-) (nucA/comI) [Bacillus cereus strain GUCC 3]
ATACATGAAGCAAAAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGT
GCCAGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAG
GAAAACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGG
AAATTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGG
AAAAGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGTGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAAT
ACCCAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

77.931

0.545