Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LDO91_RS30525 Genome accession   NZ_AP025149
Coordinates   2766307..2766570 (-) Length   87 a.a.
NCBI ID   WP_399484602.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15642     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2761307..2771570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS12235 moaC 2761525..2762001 (-) 477 WP_126606782.1 cyclic pyranopterin monophosphate synthase MoaC -
  LDO91_RS12240 moaB 2762012..2762524 (-) 513 WP_101111493.1 molybdenum cofactor biosynthesis protein B -
  LDO91_RS12245 moaA 2762591..2763583 (-) 993 WP_126606783.1 GTP 3',8-cyclase MoaA -
  LDO91_RS12250 yvcK 2763926..2764813 (+) 888 WP_126606784.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  LDO91_RS12255 - 2764802..2765149 (-) 348 WP_101111490.1 Hpt domain-containing protein -
  LDO91_RS12260 luxO 2765180..2766310 (-) 1131 WP_399484599.1 sigma-54-dependent transcriptional regulator Regulator
  LDO91_RS30525 luxO 2766307..2766570 (-) 264 WP_399484602.1 response regulator Regulator
  LDO91_RS12265 uvrB 2766841..2768871 (-) 2031 WP_126606786.1 excinuclease ABC subunit UvrB -
  LDO91_RS12270 - 2769540..2769803 (-) 264 WP_185829735.1 phage protease -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9562.04 Da        Isoelectric Point: 4.2148

>NTDB_id=90065 LDO91_RS30525 WP_399484602.1 2766307..2766570(-) (luxO) [Vibrio penaeicida strain IFO 15642]
MQDTTTNPNPKYLLMVEDTASVAALYRSYLNPLGLDITIVGTGIDAIKSLEKRTPDLILLDLRLPDMTGMDVLSSVKSNY
PDFLSSL

Nucleotide


Download         Length: 264 bp        

>NTDB_id=90065 LDO91_RS30525 WP_399484602.1 2766307..2766570(-) (luxO) [Vibrio penaeicida strain IFO 15642]
ATGCAAGACACAACAACTAATCCGAATCCAAAATATCTTCTCATGGTAGAAGATACCGCTTCGGTTGCAGCGTTATACCG
ATCCTATCTTAATCCACTTGGCTTGGATATTACTATTGTCGGGACGGGAATAGATGCAATAAAAAGTCTCGAAAAGCGAA
CTCCTGATCTCATTTTACTCGACTTACGCCTACCTGATATGACCGGGATGGATGTCCTTTCGTCAGTAAAGTCCAATTAC
CCTGATTTCCTGTCATCTTTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

77.941

78.161

0.609

Multiple sequence alignment