Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ99_RS05685 Genome accession   NZ_AP027764
Coordinates   1181524..1182039 (+) Length   171 a.a.
NCBI ID   WP_039021925.1    Uniprot ID   -
Organism   Escherichia coli strain 2017-02-2CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176524..1187039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ99_RS05640 (VEE76_10830) csrA 1177276..1177461 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ99_RS05670 (VEE76_10840) yqaB 1178754..1179320 (+) 567 WP_039021923.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ99_RS05675 (VEE76_10850) yqaA 1179317..1179745 (+) 429 WP_039021924.1 YqaA family protein -
  AABJ99_RS05680 (VEE76_10860) gshA 1179818..1181374 (+) 1557 WP_000611806.1 glutamate--cysteine ligase -
  AABJ99_RS05685 (VEE76_10870) luxS 1181524..1182039 (+) 516 WP_039021925.1 S-ribosylhomocysteine lyase Regulator
  AABJ99_RS05690 - 1182084..1183197 (-) 1114 Protein_1111 AAA family ATPase -
  AABJ99_RS05695 (VEE76_10900) - 1183194..1183901 (-) 708 WP_039021927.1 RNA ligase family protein -
  AABJ99_RS05700 (VEE76_10910) emrB 1184156..1185694 (-) 1539 WP_032184969.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ99_RS05705 (VEE76_10920) emrA 1185711..1186883 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19442.23 Da        Isoelectric Point: 5.2487

>NTDB_id=90059 AABJ99_RS05685 WP_039021925.1 1181524..1182039(+) (luxS) [Escherichia coli strain 2017-02-2CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVANAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90059 AABJ99_RS05685 WP_039021925.1 1181524..1182039(+) (luxS) [Escherichia coli strain 2017-02-2CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTTGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTAATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGTACTTATCAGATGC
ATTCGTTGCAGGAAGCGCAGGATATTGCGCGTAATATCCTGGAACGTGACGTACGCATCAACAGCAACGAAGAGTTGGCG
CTGCCGAAAGAAAAGTTGCAGGAATTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment