Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RGF10_RS22135 Genome accession   NZ_CP137761
Coordinates   4314232..4314555 (+) Length   107 a.a.
NCBI ID   WP_318505817.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4309232..4319555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS22105 - 4309730..4310905 (+) 1176 WP_318505809.1 MFS transporter -
  RGF10_RS22110 - 4311143..4311964 (-) 822 WP_318509646.1 YihY/virulence factor BrkB family protein -
  RGF10_RS22115 - 4311995..4312363 (-) 369 WP_318505811.1 YtxH domain-containing protein -
  RGF10_RS22120 - 4312378..4312843 (-) 466 Protein_4325 low molecular weight protein-tyrosine-phosphatase -
  RGF10_RS22125 - 4312974..4313195 (+) 222 WP_318505813.1 DUF1128 domain-containing protein -
  RGF10_RS22130 map 4313247..4313999 (-) 753 WP_318505816.1 type I methionyl aminopeptidase -
  RGF10_RS22135 sinR 4314232..4314555 (+) 324 WP_318505817.1 helix-turn-helix domain-containing protein Regulator
  RGF10_RS22140 - 4314670..4314798 (-) 129 WP_318505819.1 anti-repressor SinI family protein -
  RGF10_RS22145 - 4315621..4315785 (+) 165 WP_318505821.1 hypothetical protein -
  RGF10_RS22150 hutH 4315810..4317312 (-) 1503 Protein_4331 histidine ammonia-lyase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12442.25 Da        Isoelectric Point: 8.4122

>NTDB_id=900585 RGF10_RS22135 WP_318505817.1 4314232..4314555(+) (sinR) [Bacillus sp. T3]
MIGDRVKRLRLEKKMSLTELADQAGVAKSYLSSLERNLQSNPSIQFLEKIATVLGVSVDYFILNKQNTDQLDKDWIDLVK
EAMDSGVTKDQFREYLEFNKWKINQNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=900585 RGF10_RS22135 WP_318505817.1 4314232..4314555(+) (sinR) [Bacillus sp. T3]
ATGATAGGTGATCGAGTAAAAAGGCTTCGTCTTGAGAAGAAAATGTCACTAACAGAGCTTGCTGATCAAGCAGGTGTTGC
GAAGTCTTATTTAAGTTCATTAGAACGCAATCTACAATCTAATCCCTCTATTCAATTCCTAGAAAAAATAGCAACCGTCC
TTGGCGTATCTGTTGATTATTTTATCCTTAATAAACAAAACACTGATCAATTAGACAAGGATTGGATTGATTTAGTCAAA
GAAGCAATGGATTCTGGTGTTACGAAAGACCAATTTCGTGAATACTTGGAATTTAACAAATGGAAAATTAACCAAAATAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(71-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

59.259

100

0.598