Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RGF10_RS19630 Genome accession   NZ_CP137761
Coordinates   3838975..3839925 (-) Length   316 a.a.
NCBI ID   WP_318509603.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3833975..3844925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS19600 - 3833981..3834727 (-) 747 WP_318505090.1 YjbA family protein -
  RGF10_RS19605 - 3834805..3835068 (-) 264 WP_412176645.1 hypothetical protein -
  RGF10_RS19610 - 3835157..3835966 (-) 810 WP_318505091.1 DUF2268 domain-containing protein -
  RGF10_RS19615 fabF 3836153..3837394 (-) 1242 WP_318505092.1 beta-ketoacyl-ACP synthase II -
  RGF10_RS19620 - 3837449..3838381 (-) 933 WP_318505093.1 beta-ketoacyl-ACP synthase III -
  RGF10_RS19625 - 3838618..3838893 (+) 276 WP_318505094.1 hypothetical protein -
  RGF10_RS19630 med 3838975..3839925 (-) 951 WP_318509603.1 BMP family ABC transporter substrate-binding protein Regulator
  RGF10_RS19635 - 3840161..3841012 (-) 852 WP_318505095.1 hypothetical protein -
  RGF10_RS19640 - 3841082..3841819 (-) 738 WP_318505096.1 hydrolase -
  RGF10_RS19645 - 3842004..3842186 (+) 183 WP_318505097.1 YjzD family protein -
  RGF10_RS19650 clpB 3842297..3844892 (-) 2596 Protein_3873 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35128.64 Da        Isoelectric Point: 4.9147

>NTDB_id=900583 RGF10_RS19630 WP_318509603.1 3838975..3839925(-) (med) [Bacillus sp. T3]
MLKHLGIFLLLLFLLAGCGQQEGTGKLSKVGLLVPETVNDQVWGTKGYNGMLKIQSKFNAEVYYREGMNSLELVKQAVKE
FDQKGINLVFGHGNEYAAFFNEVADDYPNIHFVSFNGDAERKNTTSLNFDGYAMGFFGGMVAGHMTKTNQVGVIAAYEWQ
PEVKGFYDGALYENKNVNVSINYVGHWDDDVKAISFLDSMLAKRADIIYPAGDGYNVPVIEKIKENNKYAIGFVSDQSDL
GESTVLTSTVQHVDTLYELVAQQYVDGKLKSGNYSYDFQDNVISLGKFSPLVDKPFISKLNGDIQSYKETGKLPNN

Nucleotide


Download         Length: 951 bp        

>NTDB_id=900583 RGF10_RS19630 WP_318509603.1 3838975..3839925(-) (med) [Bacillus sp. T3]
ATCTTGAAGCATCTTGGAATATTTCTTTTATTACTCTTCCTGCTAGCTGGATGTGGGCAGCAAGAAGGAACTGGTAAGCT
ATCAAAGGTAGGATTACTTGTTCCTGAAACAGTAAATGATCAAGTGTGGGGTACAAAGGGTTATAACGGAATGTTAAAGA
TTCAATCAAAATTTAATGCGGAGGTCTATTATAGAGAAGGGATGAATTCCCTGGAACTTGTTAAGCAAGCTGTGAAGGAA
TTTGATCAAAAAGGAATTAATTTGGTCTTTGGGCATGGAAATGAGTATGCGGCTTTTTTTAATGAAGTGGCTGATGACTA
TCCCAATATCCATTTTGTCAGCTTTAACGGGGATGCTGAACGGAAGAATACGACGAGTTTAAATTTTGATGGTTATGCAA
TGGGTTTTTTTGGCGGGATGGTAGCAGGACATATGACGAAAACTAATCAGGTGGGCGTCATTGCTGCCTATGAGTGGCAG
CCGGAGGTGAAGGGTTTCTATGATGGAGCCCTCTATGAAAATAAAAACGTGAACGTATCAATTAACTATGTTGGCCATTG
GGACGATGATGTTAAGGCCATTTCATTCTTAGATTCCATGCTTGCCAAAAGAGCAGATATCATTTATCCCGCAGGTGACG
GCTATAATGTTCCGGTTATTGAAAAAATAAAAGAAAACAATAAATATGCAATTGGTTTTGTCTCAGATCAATCAGATTTA
GGCGAATCTACGGTTTTGACTAGTACGGTGCAGCATGTTGACACGTTATATGAATTGGTCGCACAGCAATATGTTGACGG
AAAGCTAAAGTCTGGCAATTACTCGTACGATTTCCAAGATAATGTCATCAGTTTAGGTAAATTTAGTCCACTTGTTGATA
AACCTTTTATTTCAAAGTTAAATGGTGATATTCAATCTTATAAAGAAACGGGCAAACTGCCAAACAATTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.481

100

0.535