Detailed information NTG0090058

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDO91_RS17420
• Genome accession: NZ_AP025149
• Coordinates: 3896619..3897623 (+)
• Length: 334 a.a.
• NCBI ID: WP_101114022.1
• Uniprot ID: A0AAV5NX12
• Organism: Vibrio penaeicida strain IFO 15642
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3891619..3902623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO91_RS17400	metJ	3891692..3892012 (+)	321	WP_101114045.1	met regulon transcriptional regulator MetJ	-
LDO91_RS17405	-	3892119..3893381 (-)	1263	WP_126609356.1	malic enzyme-like NAD(P)-binding protein	-
LDO91_RS17410	rpmE	3893649..3893864 (-)	216	WP_101114026.1	50S ribosomal protein L31	-
LDO91_RS17415	priA	3894167..3896368 (+)	2202	WP_126609355.1	primosomal protein N'	-
LDO91_RS17420	cytR	3896619..3897623 (+)	1005	WP_101114022.1	DNA-binding transcriptional regulator CytR	Regulator
LDO91_RS17425	-	3897734..3898270 (+)	537	WP_126609354.1	SPOR domain-containing protein	-
LDO91_RS17430	hslV	3898381..3898917 (+)	537	WP_101114019.1	ATP-dependent protease subunit HslV	-
LDO91_RS17435	hslU	3898931..3900262 (+)	1332	WP_126609353.1	HslU--HslV peptidase ATPase subunit	-
LDO91_RS17440	-	3900375..3901292 (+)	918	WP_126609352.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDO91_RS17445	rraA	3901370..3901894 (+)	525	WP_126609351.1	ribonuclease E activity regulator RraA	-
LDO91_RS17450	zapB	3902081..3902323 (-)	243	WP_101114015.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36485.94 Da
• Isoelectric Point: 6.6049

>NTDB_id=90058 LDO91_RS17420 WP_101114022.1 3896619..3897623(+) (cytR) [Vibrio penaeicida strain IFO 15642]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVESAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDSYFTEIIRG
IEDVAVENGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHSKIAQISGPDDAALCQFRNQGYQQALRRAGITMNPTYKEMGDFTFESGHKAVTKLLSLPEPPTA
VFCHNDAMAIGAIKGAKAAGLKVPQDLSVVGFDDIQFAEFCDPPLTTITQPRYEIGRQAMLMLLEILKGRDVHAGSRLLE
THLKIRESAAPPRT

Nucleotide

• Length: 1005 bp

>NTDB_id=90058 LDO91_RS17420 WP_101114022.1 3896619..3897623(+) (cytR) [Vibrio penaeicida strain IFO 15642]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGAGTTTCTACTGCAACCGTATCACGAGCTCTGATGAACCCTGAGAA
GGTTTCATCTACTACGCGTAAACGTGTAGAGAGCGCCGTTTTGGAAGCTGGTTATTCACCGAATTCACTGGCAAGAAACT
TACGACGTAATGAATCCAAAACCATCGTTGCAATTGTACCTGACATCTGTGACTCCTATTTCACTGAGATCATTCGTGGC
ATTGAAGATGTAGCTGTGGAAAATGGATATCTCGTACTGTTGGGGGACAGCGGTCAGCAAAAGAAACGAGAAAGCTCGTT
GGTCAACTTGGTTTTCACTAAACAAGCCGATGGCATGTTGCTTTTGGGTACGCACTTGCCATTCGATGTCAGCAAACCGG
AACAAAAAAACCTGCCACCACTGGTGATGGCTTGTGAATTTGCACCGGAACTGGAATTGCCGACAGTCCATATTGATAAC
CTAACATCTTCTTTCGAGGCGGTGAACTATTTGACGCAAATGGGCCACTCCAAGATTGCTCAGATTTCAGGGCCAGACGA
TGCTGCGCTTTGCCAGTTTAGAAACCAAGGGTATCAGCAAGCGCTGAGAAGAGCTGGCATAACGATGAACCCCACTTATA
AAGAGATGGGAGATTTCACCTTTGAGTCTGGTCACAAGGCAGTCACCAAATTGCTTTCGTTACCAGAGCCACCAACCGCT
GTTTTCTGTCATAACGACGCCATGGCAATTGGAGCAATCAAAGGAGCAAAAGCCGCAGGATTAAAAGTACCTCAAGATTT
ATCCGTTGTAGGCTTCGATGATATTCAGTTTGCTGAATTCTGCGACCCTCCACTAACGACCATCACGCAGCCACGCTATG
AAATCGGTCGACAAGCCATGCTGATGCTGCTTGAAATCTTGAAAGGTCGTGACGTTCACGCAGGTTCACGCCTGTTGGAA
ACACACTTGAAAATCCGAGAAAGCGCCGCTCCACCAAGAACTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	86.145	99.401	0.856
cytR	Vibrio parahaemolyticus RIMD 2210633	83.784	99.701	0.835