Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RGF10_RS19420 Genome accession   NZ_CP137761
Coordinates   3799294..3799572 (+) Length   92 a.a.
NCBI ID   WP_318505064.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3794294..3804572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS19390 - 3794834..3795058 (-) 225 WP_318505060.1 hypothetical protein -
  RGF10_RS19395 - 3795274..3795831 (-) 558 WP_318509593.1 shikimate kinase -
  RGF10_RS19400 - 3796115..3796369 (-) 255 WP_318505061.1 hypothetical protein -
  RGF10_RS19405 - 3796585..3796944 (+) 360 WP_318505062.1 Lin0512 family protein -
  RGF10_RS19410 - 3796995..3797435 (-) 441 WP_318505063.1 Rrf2 family transcriptional regulator -
  RGF10_RS19415 - 3797845..3798712 (+) 868 Protein_3828 SDR family oxidoreductase -
  RGF10_RS19420 abrB 3799294..3799572 (+) 279 WP_318505064.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RGF10_RS19425 - 3799689..3800546 (-) 858 WP_318505065.1 MurR/RpiR family transcriptional regulator -
  RGF10_RS19430 - 3800790..3801785 (+) 996 Protein_3831 Gfo/Idh/MocA family oxidoreductase -
  RGF10_RS19435 - 3801859..3802836 (+) 978 WP_318505066.1 Gfo/Idh/MocA family oxidoreductase -
  RGF10_RS19445 - 3803257..3803985 (+) 729 WP_318505067.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10492.07 Da        Isoelectric Point: 5.1765

>NTDB_id=900579 RGF10_RS19420 WP_318505064.1 3799294..3799572(+) (abrB) [Bacillus sp. T3]
MKSTGILRKVDELGRIVIPIELRRTLEIAEKDPLEIYVNEDKIILQKHRENMTCVVTGDETDQNQSFSNGRIVLSPNGAK
QLLNEIKEAFNL

Nucleotide


Download         Length: 279 bp        

>NTDB_id=900579 RGF10_RS19420 WP_318505064.1 3799294..3799572(+) (abrB) [Bacillus sp. T3]
ATGAAATCTACTGGTATTCTTCGTAAAGTTGACGAATTAGGAAGAATTGTTATTCCAATTGAGTTAAGGAGAACTTTAGA
AATTGCAGAAAAAGACCCTCTCGAAATTTATGTTAATGAGGATAAGATTATCTTACAGAAACATAGAGAAAATATGACCT
GTGTTGTAACGGGGGATGAAACCGATCAAAACCAAAGTTTTTCAAATGGACGAATCGTGTTAAGTCCCAATGGAGCAAAA
CAACTCCTAAATGAAATCAAGGAAGCATTTAATCTGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

65.517

94.565

0.62