Detailed information NTG0900578

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RGF10_RS18990
• Genome accession: NZ_CP137761
• Coordinates: 3713774..3715924 (+)
• Length: 716 a.a.
• NCBI ID: WP_318504990.1
• Uniprot ID: -
• Organism: Bacillus sp. T3
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 3708774..3720924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGF10_RS18960	-	3709848..3710114 (-)	267	WP_318504984.1	phosphocarrier protein HPr	-
RGF10_RS18965	-	3710537..3710710 (-)	174	WP_318504985.1	aspartyl-phosphate phosphatase Spo0E family protein	-
RGF10_RS18970	-	3710852..3711046 (-)	195	WP_318504986.1	hypothetical protein	-
RGF10_RS18975	-	3711340..3711528 (+)	189	WP_318504987.1	YkvS family protein	-
RGF10_RS18980	-	3711779..3712390 (+)	612	WP_318504988.1	type II CAAX endopeptidase family protein	-
RGF10_RS18985	-	3712440..3713477 (-)	1038	WP_318504989.1	GerAB/ArcD/ProY family transporter	-
RGF10_RS18990	clpC	3713774..3715924 (+)	2151	WP_318504990.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RGF10_RS18995	-	3715986..3717680 (-)	1695	WP_318504991.1	M3 family oligoendopeptidase	-
RGF10_RS19000	-	3717755..3718195 (-)	441	WP_318504992.1	MarR family transcriptional regulator	-
RGF10_RS19005	-	3718400..3719641 (+)	1242	WP_318504993.1	MFS transporter	-
RGF10_RS19010	-	3719677..3720204 (-)	528	WP_318504994.1	hemerythrin domain-containing protein	-
RGF10_RS19015	-	3720425..3720754 (+)	330	WP_318504995.1	hypothetical protein	-

Sequence

Protein

• Length: 716 a.a.
• Molecular weight: 80141.54 Da
• Isoelectric Point: 6.1660

>NTDB_id=900578 RGF10_RS18990 WP_318504990.1 3713774..3715924(+) (clpC) [Bacillus sp. T3]
MLCYKCQSNEANIQMNITVNGQKKHFLFCEECFTKEREKIGNPFVNGMNGFNHLPLEDFLQGFSGNHSEPPSIQQPNKDS
RQNNGEGFIDQFGRNLTQFAKAGLIDPVIGRDQEVARIMEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGKVPAKL
LGKEVYLLDVASLVSNTGIRGQFEERMKKLISDLQQRKNIILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVVGA
TTLKEYRKIEKDPALERRFQPVLVSEPSLEKAVEILKGIQGKYEQYHNVSYTDEAIEACVTLSHRYIQDRFLPDKAIDLM
DEAGSILNLNSDTIPDTTQIHQRLKDISKEKEIALKKEQYEQAAKLRDEEANLEKQLTQTENSNHEHSVVNVQQIQAIVE
KKTGIPVGKLQETEQSKMKHLEENLSSKVIGQEEAVKKVAKAIRRSRAGLKPKHRPIGSFLFVGPTGVGKTELTKTLAQE
LFGSKDAMIRLDMSEYMEKHSVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTD
SQGRTVSFKDSVIIMTSNAGIGHKTIEVGFGKSTAITESSILDSLGSFFKPEFLNRFDSIIEFRSLNKDQLLNIVDLMLD
ELQQVMSEQNLNLTVTSEVKNKLVELGYHPAFGARPLRRVIQEQLEDKITDLILDETHAENLIALVEGQDIIVRSN

Nucleotide

• Length: 2151 bp

>NTDB_id=900578 RGF10_RS18990 WP_318504990.1 3713774..3715924(+) (clpC) [Bacillus sp. T3]
ATGCTTTGCTACAAATGTCAATCCAACGAAGCAAACATTCAAATGAACATTACAGTCAATGGTCAGAAAAAGCATTTCCT
CTTTTGTGAGGAATGCTTTACAAAGGAACGTGAAAAGATTGGGAATCCTTTTGTAAATGGAATGAATGGGTTTAACCACC
TCCCATTAGAGGATTTTCTGCAAGGCTTTTCCGGAAATCATTCAGAGCCACCCAGTATTCAACAACCAAATAAAGATAGT
AGGCAAAATAATGGCGAAGGCTTTATTGATCAGTTCGGCCGCAATCTAACTCAATTTGCAAAGGCTGGTTTGATTGACCC
TGTAATTGGTCGCGATCAAGAAGTCGCCCGCATTATGGAAATTTTAAATAGAAGAAATAAAAACAACCCGGTGTTAATTG
GTGAACCAGGTGTTGGTAAAACCGCAATTGCGGAAGGCCTTGCTTTAAAGATTGCGGAAGGCAAAGTCCCAGCGAAACTG
CTAGGTAAAGAGGTTTACTTACTTGATGTAGCCTCACTTGTTTCCAATACTGGTATCCGTGGACAATTTGAAGAACGGAT
GAAAAAGCTAATCAGTGACTTGCAGCAACGAAAGAATATCATTCTCTTTATTGATGAAATTCATCTTTTAGTCGGGGCTG
GTTCTGCGGAGGGCTCCATGGATGCAGGAAATATCCTTAAGCCAGCTTTAGCTCGTGGCGAACTCCAAGTCGTTGGAGCA
ACAACGTTAAAAGAGTACCGTAAAATTGAAAAAGACCCAGCATTAGAACGACGCTTCCAACCTGTATTAGTGTCTGAACC
ATCATTAGAAAAAGCAGTGGAAATCTTAAAGGGGATTCAAGGAAAATACGAGCAGTATCACAACGTTTCTTATACAGATG
AGGCAATTGAAGCTTGTGTAACACTCTCTCATCGCTACATTCAAGACCGATTCCTTCCAGATAAGGCGATTGACTTAATG
GATGAAGCAGGATCCATTTTAAACCTAAATTCCGATACTATACCTGATACAACCCAAATCCATCAACGCCTTAAGGATAT
TAGCAAGGAAAAAGAAATTGCCTTAAAAAAGGAACAATATGAACAAGCAGCTAAGCTTCGTGATGAAGAAGCAAACCTTG
AAAAGCAATTGACTCAAACAGAAAATAGCAACCATGAACATTCGGTCGTGAATGTACAGCAGATTCAAGCAATTGTTGAG
AAGAAAACTGGAATTCCTGTAGGAAAGCTACAGGAGACTGAGCAAAGTAAGATGAAGCATTTAGAGGAAAATCTTTCAAG
CAAAGTGATTGGCCAAGAGGAAGCCGTGAAAAAAGTAGCCAAAGCGATTCGTCGAAGCCGTGCTGGTCTGAAACCAAAGC
ACCGTCCAATCGGCTCTTTCCTATTTGTTGGACCAACTGGAGTCGGTAAGACCGAGTTAACGAAAACATTGGCACAGGAG
TTGTTTGGTTCAAAAGATGCGATGATACGGCTTGATATGAGCGAATACATGGAAAAGCATAGCGTATCTAAGATCATCGG
TTCTCCTCCAGGTTATGTTGGTCATGAAGAAGCAGGACAACTCACAGAGAAGGTTCGTCGCAATCCATACAGTATTATTC
TATTGGATGAAATTGAAAAAGCTCATCCAGATGTACAGCATATGTTCCTGCAAATCCTTGAGGATGGTAGATTAACAGAT
AGCCAAGGACGAACAGTCAGCTTTAAGGATTCTGTTATTATTATGACTAGCAATGCAGGTATTGGCCATAAAACGATTGA
GGTCGGCTTTGGAAAGAGCACAGCCATTACAGAATCAAGCATTCTTGATTCATTAGGCTCCTTCTTCAAACCAGAATTCT
TAAATCGTTTTGACAGCATTATCGAATTTAGATCATTAAACAAAGATCAATTACTAAACATTGTTGATTTAATGCTTGAT
GAATTACAGCAAGTTATGAGTGAACAAAACTTGAATTTAACGGTTACATCTGAAGTGAAAAATAAGCTTGTTGAACTTGG
CTATCACCCTGCTTTCGGGGCTCGACCACTTCGTCGTGTAATCCAAGAACAATTAGAAGACAAAATCACCGACTTAATTT
TAGATGAAACACATGCAGAAAATCTAATTGCCTTAGTCGAAGGTCAGGATATCATTGTAAGATCAAATTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (455-620)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (626-701)

• ATPase family associated with various cellular activities (AAA) (AAA) (131-261)

• AAA lid domain (AAA_lid_9) (269-369)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	58.152	100	0.598
clpE	Streptococcus mutans UA159	56.707	100	0.596
clpE	Streptococcus pneumoniae Rx1	56.735	100	0.582
clpE	Streptococcus pneumoniae D39	56.735	100	0.582
clpE	Streptococcus pneumoniae R6	56.735	100	0.582
clpE	Streptococcus pneumoniae TIGR4	56.735	100	0.582
clpC	Bacillus subtilis subsp. subtilis str. 168	54.516	86.592	0.472
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	44.597	91.76	0.409
clpC	Streptococcus pneumoniae TIGR4	45.411	86.732	0.394
clpC	Streptococcus pneumoniae Rx1	45.411	86.732	0.394
clpC	Streptococcus pneumoniae D39	45.411	86.732	0.394
clpC	Streptococcus thermophilus LMD-9	45.25	86.732	0.392
clpC	Streptococcus thermophilus LMG 18311	45.089	86.732	0.391
clpC	Streptococcus mutans UA159	43.937	88.687	0.39