Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RGF10_RS18920 Genome accession   NZ_CP137761
Coordinates   3702675..3703148 (+) Length   157 a.a.
NCBI ID   WP_318504978.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697675..3708148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS18890 - 3698211..3698450 (-) 240 WP_318504973.1 hypothetical protein -
  RGF10_RS18895 - 3698513..3699727 (-) 1215 WP_318504974.1 EAL domain-containing protein -
  RGF10_RS18900 - 3699861..3700649 (+) 789 WP_318504975.1 C39 family peptidase -
  RGF10_RS18905 - 3700779..3701654 (+) 876 Protein_3725 metallophosphoesterase -
  RGF10_RS18910 - 3701766..3701975 (+) 210 WP_318504976.1 hypothetical protein -
  RGF10_RS18915 - 3702036..3702533 (+) 498 WP_318504977.1 L,D-transpeptidase family protein -
  RGF10_RS18920 kre 3702675..3703148 (+) 474 WP_318504978.1 YkyB family protein Regulator
  RGF10_RS18925 - 3703465..3703668 (+) 204 WP_318504979.1 hypothetical protein -
  RGF10_RS18930 corA 3703824..3704798 (-) 975 WP_318504980.1 magnesium/cobalt transporter CorA -
  RGF10_RS18935 - 3705004..3706157 (+) 1154 Protein_3731 aminotransferase A -
  RGF10_RS18940 - 3706233..3706415 (-) 183 WP_318504981.1 hypothetical protein -
  RGF10_RS18945 - 3706490..3707369 (-) 880 Protein_3733 NAD(P)-dependent oxidoreductase -
  RGF10_RS18950 - 3707509..3707973 (-) 465 WP_318504982.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17976.75 Da        Isoelectric Point: 10.8901

>NTDB_id=900577 RGF10_RS18920 WP_318504978.1 3702675..3703148(+) (kre) [Bacillus sp. T3]
MNRDRNNPQKLIPTVDNLSQAIFIVNRHAKTATNPKFLYKLKHEALKKMLREGKAKKVGLHFSANPKYSQQQSDVLVVSG
NYSFHIPPSKEDFGILPHLGKLSDHVKNPKTRLPLTVAKVLLQTYTWIRERDNEGSTRTGKPKPSQPQFKRLGESYF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=900577 RGF10_RS18920 WP_318504978.1 3702675..3703148(+) (kre) [Bacillus sp. T3]
TTGAACCGGGACAGGAATAATCCTCAAAAACTGATTCCAACAGTTGATAACCTCTCACAAGCAATCTTCATTGTCAATCG
ACATGCAAAAACTGCCACAAACCCAAAATTTTTATACAAACTTAAGCATGAAGCCTTAAAAAAAATGCTTCGAGAAGGAA
AAGCAAAAAAGGTTGGTCTTCATTTTTCAGCGAATCCTAAATATAGCCAACAACAATCCGATGTACTTGTTGTAAGTGGA
AATTATTCTTTTCATATTCCCCCTTCAAAGGAAGACTTTGGCATACTTCCACATCTAGGAAAGTTAAGTGACCATGTCAA
AAATCCAAAAACTAGACTTCCCCTAACTGTAGCTAAGGTTCTATTACAAACCTATACCTGGATTCGCGAGCGTGATAACG
AAGGTAGTACAAGAACGGGTAAACCAAAACCGAGTCAACCTCAATTTAAGCGGCTTGGTGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

55.195

98.089

0.541