Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RGF10_RS08315 Genome accession   NZ_CP137761
Coordinates   1609396..1610007 (-) Length   203 a.a.
NCBI ID   WP_318508598.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604396..1615007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS08290 - 1604905..1605606 (+) 702 WP_412176689.1 DnaD domain-containing protein -
  RGF10_RS08295 nth 1605673..1606329 (+) 657 WP_318508594.1 endonuclease III -
  RGF10_RS23790 - 1606326..1606689 (+) 364 Protein_1604 YpoC family protein -
  RGF10_RS08310 - 1606757..1609351 (-) 2595 WP_318508597.1 PBP1A family penicillin-binding protein -
  RGF10_RS08315 recU 1609396..1610007 (-) 612 WP_318508598.1 Holliday junction resolvase RecU Machinery gene
  RGF10_RS08320 - 1610129..1611115 (+) 987 WP_318508599.1 DUF2515 domain-containing protein -
  RGF10_RS08325 - 1611516..1611806 (+) 291 WP_318508600.1 hypothetical protein -
  RGF10_RS08330 - 1612000..1612212 (-) 213 WP_318508601.1 YppF family protein -
  RGF10_RS08335 - 1612424..1612990 (+) 567 WP_318508602.1 YppG family protein -
  RGF10_RS08340 - 1613333..1613638 (-) 306 WP_318508603.1 Hsp20/alpha crystallin family protein -
  RGF10_RS08345 - 1613635..1613793 (-) 159 WP_318508604.1 hypothetical protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23883.44 Da        Isoelectric Point: 9.6173

>NTDB_id=900570 RGF10_RS08315 WP_318508598.1 1609396..1610007(-) (recU) [Bacillus sp. T3]
MNFHYPNGRRYIQQTKQIIPSIKTEKKLSYSNRGMTLEDDINETNRYYLENNIAVIHKKPTPVQIVNVDYPKRSAAVIKE
AYFKQASTTDYNGIYKGRYIDFEAKETKFLTSFPLKNFHEHQIKHMSAVLGHGGICFVILRFSAIEKVYLLQADQLLHYW
DRMVNGGRKSITLEEIEKGSHFIPLSYNPRIDYIKIIDYLYTF

Nucleotide


Download         Length: 612 bp        

>NTDB_id=900570 RGF10_RS08315 WP_318508598.1 1609396..1610007(-) (recU) [Bacillus sp. T3]
ATGAATTTTCATTATCCTAATGGAAGGCGTTATATTCAACAGACAAAACAAATCATACCTAGCATCAAGACAGAAAAGAA
GCTATCCTATAGCAATCGTGGTATGACTTTAGAGGATGATATCAACGAGACGAATCGCTATTATTTAGAAAACAATATTG
CCGTCATTCATAAGAAACCAACACCCGTCCAAATTGTCAATGTGGACTATCCAAAAAGAAGTGCAGCAGTGATTAAGGAA
GCATACTTTAAACAAGCATCAACAACGGATTATAATGGAATATATAAAGGCAGGTATATCGATTTTGAGGCAAAGGAAAC
AAAGTTTCTCACTTCATTTCCATTAAAAAATTTTCATGAACATCAAATCAAACATATGAGTGCAGTTCTCGGACATGGTG
GAATTTGCTTTGTCATTTTGCGTTTTTCGGCTATTGAAAAAGTATACCTTCTTCAAGCTGACCAGCTTCTCCATTATTGG
GATAGAATGGTCAACGGTGGAAGAAAATCAATTACTTTAGAAGAAATCGAAAAGGGTAGCCATTTTATTCCACTAAGCTA
CAATCCGAGAATTGACTATATAAAAATAATCGATTATCTTTATACCTTCTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

67.172

97.537

0.655