Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LDO91_RS17315 Genome accession   NZ_AP025149
Coordinates   3867061..3868077 (-) Length   338 a.a.
NCBI ID   WP_126606772.1    Uniprot ID   A0AAV5NV36
Organism   Vibrio penaeicida strain IFO 15642     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3862061..3873077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS17290 aroK 3862949..3863467 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO91_RS17295 - 3863656..3865373 (-) 1718 Protein_3349 type IV pilus secretin PilQ -
  LDO91_RS17300 pilP 3865419..3865931 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO91_RS17305 pilO 3865924..3866511 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO91_RS17310 pilN 3866508..3867068 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO91_RS17315 pilM 3867061..3868077 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDO91_RS17320 - 3868222..3870717 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -
  LDO91_RS17325 oxyR 3870809..3871690 (-) 882 WP_101114073.1 DNA-binding transcriptional regulator OxyR -
  LDO91_RS17330 - 3871870..3872601 (+) 732 WP_126606774.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37195.52 Da        Isoelectric Point: 6.8371

>NTDB_id=90057 LDO91_RS17315 WP_126606772.1 3867061..3868077(-) (pilM) [Vibrio penaeicida strain IFO 15642]
MGRSLVIGIDFGHHSIKAVAMKPIGELMQLVGYNELNVPEDIFSENHTLDYQKIVKKLKELKKGLPLFSHQVAVSVPDKA
VISKVLQIEQDMDGREQEFAVHQAFGQQSPIPLEELSLDFIEVDQKVTTRSSTSTFQVYATRKEVVDSRVTALTKAGFKP
LTIDVHANSLLKVWRLASQVHPDRRQWMLVDIGLNQTSLCTVAAGRTPFYKEIPFGTQNVAQSQAMSDAMTLSSDSVTQS
FVKDLGEKLQRHISLYNSVNPQQNIDGIWLSGGGANLVGIADMLSKELRLETSPLNPFGLVENGTKQSVKQLSDSAAYGV
AMGLAISGVEWLKGNHHA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=90057 LDO91_RS17315 WP_126606772.1 3867061..3868077(-) (pilM) [Vibrio penaeicida strain IFO 15642]
ATGGGTAGATCTTTAGTAATTGGCATCGATTTCGGTCATCACAGTATTAAAGCTGTCGCAATGAAGCCTATCGGCGAGCT
AATGCAATTGGTTGGTTATAATGAGCTTAATGTACCCGAAGATATTTTCTCTGAAAACCATACCCTCGATTATCAGAAGA
TTGTAAAGAAACTCAAAGAACTTAAAAAGGGCTTACCTCTTTTTAGTCATCAAGTCGCAGTTTCCGTACCCGATAAGGCT
GTTATCAGCAAAGTACTTCAAATTGAACAAGATATGGATGGGAGAGAGCAGGAGTTCGCTGTCCATCAAGCGTTTGGTCA
ACAATCACCGATCCCACTCGAAGAATTAAGCCTCGATTTTATTGAAGTGGACCAAAAAGTCACGACTCGCAGTTCGACTT
CCACTTTTCAAGTTTATGCGACACGCAAAGAGGTGGTCGACTCTCGTGTTACCGCATTAACGAAAGCCGGTTTTAAGCCT
CTGACGATTGATGTCCATGCCAATAGCTTGTTGAAAGTATGGCGTTTGGCTAGCCAAGTTCATCCTGATAGAAGGCAGTG
GATGCTGGTGGATATCGGTTTAAATCAAACATCTTTGTGTACTGTCGCAGCAGGCAGAACCCCTTTCTATAAAGAAATCC
CATTTGGTACTCAAAACGTTGCGCAGTCACAAGCAATGTCTGATGCCATGACTCTGAGTAGCGACTCCGTCACCCAGAGT
TTTGTCAAAGATCTGGGTGAAAAGCTACAAAGACACATCAGCTTATACAACTCCGTAAACCCCCAACAAAACATTGATGG
CATTTGGTTGAGCGGCGGCGGGGCTAATTTGGTGGGTATTGCTGACATGCTTAGTAAAGAACTTCGGCTCGAAACCTCGC
CACTAAATCCGTTTGGGTTAGTTGAAAATGGCACTAAGCAGTCGGTTAAGCAATTGTCGGATTCTGCCGCTTATGGCGTG
GCAATGGGGTTGGCGATTAGCGGTGTTGAGTGGTTAAAAGGAAATCACCATGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.118

100

0.544
  pilM Vibrio campbellii strain DS40M4

44.048

99.408

0.438

Multiple sequence alignment