Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LDO91_RS17300 Genome accession   NZ_AP025149
Coordinates   3865419..3865931 (-) Length   170 a.a.
NCBI ID   WP_101114082.1    Uniprot ID   A0AAV5NW88
Organism   Vibrio penaeicida strain IFO 15642     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3860419..3870931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO91_RS17285 aroB 3861838..3862926 (-) 1089 WP_104400116.1 3-dehydroquinate synthase -
  LDO91_RS17290 aroK 3862949..3863467 (-) 519 WP_101114086.1 shikimate kinase AroK -
  LDO91_RS17295 - 3863656..3865373 (-) 1718 Protein_3349 type IV pilus secretin PilQ -
  LDO91_RS17300 pilP 3865419..3865931 (-) 513 WP_101114082.1 pilus assembly protein PilP Machinery gene
  LDO91_RS17305 pilO 3865924..3866511 (-) 588 WP_101114080.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO91_RS17310 pilN 3866508..3867068 (-) 561 WP_126606771.1 PilN domain-containing protein Machinery gene
  LDO91_RS17315 pilM 3867061..3868077 (-) 1017 WP_126606772.1 type IV pilus assembly protein PilM Machinery gene
  LDO91_RS17320 - 3868222..3870717 (+) 2496 WP_126606773.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18570.84 Da        Isoelectric Point: 10.7318

>NTDB_id=90054 LDO91_RS17300 WP_101114082.1 3865419..3865931(-) (pilP) [Vibrio penaeicida strain IFO 15642]
MNKPLMALVAIAALSGCRANHEPLQDFILKTQANASTQVSKLQAEQSFKASEYVPVTARVPFALPKIAVVETQPSLVKDC
WQPASRRKNGKLERFALTQLKLKGVMGSGKKVSGIIQVPDGHVVKVKQGHYLGLNNGKVINITPKHLTIQETLPDGLGCW
QQRNVKLALK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=90054 LDO91_RS17300 WP_101114082.1 3865419..3865931(-) (pilP) [Vibrio penaeicida strain IFO 15642]
ATGAATAAGCCGCTGATGGCACTGGTCGCAATTGCAGCTTTAAGCGGTTGTCGTGCCAACCACGAACCGCTTCAGGACTT
TATTTTAAAGACACAAGCCAACGCGTCTACGCAAGTATCCAAGCTTCAAGCAGAGCAGTCGTTTAAGGCCAGTGAATATG
TGCCAGTAACGGCACGTGTTCCTTTTGCTTTACCCAAAATTGCGGTTGTTGAAACCCAACCATCTTTGGTTAAAGACTGT
TGGCAACCAGCCTCCCGAAGGAAGAATGGGAAATTAGAAAGGTTTGCTCTCACTCAACTCAAGTTAAAAGGGGTCATGGG
AAGCGGCAAAAAGGTGTCGGGCATTATTCAAGTCCCTGATGGTCATGTCGTCAAGGTAAAGCAGGGACATTACCTTGGTT
TAAACAATGGCAAGGTAATCAACATTACTCCAAAGCACCTGACGATTCAGGAAACACTACCTGATGGGCTTGGGTGTTGG
CAGCAGCGTAACGTGAAGCTCGCATTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)

Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1)

(1-17)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

53.846

99.412

0.535
  pilP Vibrio cholerae strain A1552

51.765

100

0.518

Multiple sequence alignment