Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   RGF10_RS06330 Genome accession   NZ_CP137761
Coordinates   1245911..1246660 (+) Length   249 a.a.
NCBI ID   WP_318508192.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240911..1251660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS06310 - 1241380..1243044 (+) 1665 WP_318509343.1 GspE/PulE family protein -
  RGF10_RS06315 pilT 1243056..1244096 (+) 1041 WP_318508188.1 type IV pilus twitching motility protein PilT Machinery gene
  RGF10_RS06320 - 1244098..1245308 (+) 1211 Protein_1207 type II secretion system F family protein -
  RGF10_RS06325 - 1245414..1245872 (+) 459 WP_318508190.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RGF10_RS06330 comC 1245911..1246660 (+) 750 WP_318508192.1 prepilin peptidase Machinery gene
  RGF10_RS06335 - 1246687..1246851 (+) 165 WP_318508194.1 hypothetical protein -
  RGF10_RS06340 pilM 1246829..1247680 (+) 852 WP_318508195.1 type IV pilus biogenesis protein PilM -
  RGF10_RS06345 - 1247683..1248072 (+) 390 WP_318508197.1 hypothetical protein -
  RGF10_RS06350 - 1248050..1248328 (+) 279 WP_318508199.1 hypothetical protein -
  RGF10_RS06355 - 1248325..1249161 (+) 837 WP_318508201.1 hypothetical protein -
  RGF10_RS06360 - 1249310..1250413 (+) 1104 WP_318508203.1 hypothetical protein -
  RGF10_RS06365 - 1250625..1251198 (+) 574 Protein_1216 Maf family protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26790.50 Da        Isoelectric Point: 9.0451

>NTDB_id=900560 RGF10_RS06330 WP_318508192.1 1245911..1246660(+) (comC) [Bacillus sp. T3]
MIHTLLFLYGITLGSFYNVVGLRVPEGKSIISPRSACPTCGHQLRASELIPVLSYLFQKGKCRVCQTGISPIYPAIELLT
GILFATAPIVIGWTSELVIALSLISLFIVITVSDLAYMIIPDKVLLVFATFFLVERLLIPLTPWWDSLIGAVVGFVLLLA
IALISKGGMGGGDIKLFALIGFVVGVKLVLLAFFLSTLLGAVLGLAGMALKLVKKGKPIPFGPFIAAGTMLAYYYGDDLI
NAYLQIFFS

Nucleotide


Download         Length: 750 bp        

>NTDB_id=900560 RGF10_RS06330 WP_318508192.1 1245911..1246660(+) (comC) [Bacillus sp. T3]
TTGATACACACATTACTCTTTTTATACGGTATTACCCTCGGCTCCTTCTATAACGTAGTCGGACTTCGAGTGCCAGAAGG
CAAGTCAATCATTTCGCCACGTTCAGCATGCCCAACATGCGGTCATCAGCTAAGAGCCTCAGAATTAATTCCAGTACTAT
CCTATTTATTTCAAAAGGGGAAATGCCGCGTCTGTCAGACGGGCATTTCGCCTATTTATCCGGCGATTGAATTGTTAACG
GGGATCTTGTTTGCAACAGCCCCGATAGTAATTGGCTGGACCAGTGAATTAGTGATTGCCTTATCGTTGATTTCATTGTT
TATTGTCATCACCGTTTCTGACTTGGCGTATATGATTATCCCTGATAAAGTATTGCTTGTATTTGCAACGTTTTTTTTGG
TAGAACGTCTCTTAATTCCGCTTACCCCATGGTGGGACTCTTTAATAGGTGCTGTAGTTGGCTTTGTGTTACTGCTCGCG
ATTGCATTGATTAGCAAGGGCGGTATGGGTGGCGGAGACATTAAACTATTCGCACTCATTGGCTTTGTTGTGGGGGTCAA
GCTTGTATTATTAGCCTTTTTTTTATCGACGCTATTAGGGGCAGTCCTTGGTTTAGCGGGAATGGCTTTGAAACTCGTAA
AAAAAGGGAAACCGATTCCGTTTGGACCTTTTATTGCTGCGGGGACGATGCTGGCCTATTATTACGGAGATGATCTTATT
AACGCCTATCTTCAAATATTTTTTTCATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)

Type IV leader peptidase family (Peptidase_A24)

(102-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.206

97.59

0.49
  pilD Acinetobacter baumannii D1279779

33.582

100

0.361