Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RGF10_RS03330 Genome accession   NZ_CP137761
Coordinates   658658..659401 (+) Length   247 a.a.
NCBI ID   WP_318507276.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 653658..664401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS03315 - 654685..655788 (+) 1104 WP_318507272.1 MraY family glycosyltransferase -
  RGF10_RS03320 - 655892..657409 (+) 1518 WP_318509321.1 DUF6056 family protein -
  RGF10_RS03325 - 657563..658195 (-) 633 WP_318507274.1 YigZ family protein -
  RGF10_RS03330 degU 658658..659401 (+) 744 WP_318507276.1 response regulator transcription factor Regulator
  RGF10_RS03335 - 659641..660483 (+) 843 WP_318507278.1 DegV family protein -
  RGF10_RS03340 - 660588..662078 (+) 1491 WP_318507280.1 DEAD/DEAH box helicase -
  RGF10_RS03345 - 662108..662842 (+) 735 WP_318507282.1 ComF family protein -
  RGF10_RS03350 hpf 663094..663648 (+) 555 WP_318507284.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27695.86 Da        Isoelectric Point: 5.9653

>NTDB_id=900555 RGF10_RS03330 WP_318507276.1 658658..659401(+) (degU) [Bacillus sp. T3]
MDPNTILRKVAIRGEKVTTSIVIIDDHQLFREGVKSILEFEPTFKVVAEGQDGQEAVALIDTYTPDVVIMDINMPNTNGI
DATRQLIEKNPDTKIIILSFQDDEYHVMQALKTGASGYLLKEMDADMLIEAIKVVAAGGSFLHPKVTHNLVNEYRRLVAA
SVESVEVRPSTYFANEIRRPLHLLTRRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIK
NGWVEVR

Nucleotide


Download         Length: 744 bp        

>NTDB_id=900555 RGF10_RS03330 WP_318507276.1 658658..659401(+) (degU) [Bacillus sp. T3]
ATGGATCCAAATACCATTTTAAGGAAAGTTGCGATAAGGGGAGAAAAAGTGACAACAAGTATTGTAATTATTGACGACCA
TCAGTTATTTAGAGAAGGTGTAAAAAGCATACTCGAATTCGAGCCAACATTTAAGGTTGTAGCAGAGGGTCAAGATGGAC
AAGAAGCCGTTGCTTTGATTGATACATATACACCAGATGTTGTCATCATGGATATAAATATGCCAAATACAAATGGAATT
GATGCAACTAGACAGCTAATTGAAAAAAATCCAGATACGAAGATCATTATTTTATCATTTCAAGATGATGAATATCACGT
GATGCAAGCATTAAAGACTGGAGCAAGCGGCTATTTATTGAAAGAAATGGATGCAGACATGCTAATTGAAGCTATAAAGG
TTGTTGCAGCTGGCGGAAGCTTTCTTCATCCGAAGGTGACACATAATCTTGTGAATGAATATCGGCGCCTTGTTGCAGCT
AGTGTTGAAAGCGTTGAAGTCCGACCTTCTACATACTTTGCTAATGAAATTCGCCGTCCGTTACACTTATTAACGCGCCG
GGAATGCGAGGTACTCCAGCTACTGACTGATGGGAAAAGCAATCGAGGTATTGGTGAAACTTTATTTATTAGTGAAAAAA
CAGTCAAAAACCATGTGAGTAATATTTTACAAAAAATGAATGTAAACGACCGAACACAGGCTGTAGTTGTGGCCATTAAA
AATGGATGGGTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(183-238)

Response regulator receiver domain (Response_reg)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

75.439

92.308

0.696