Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RGF10_RS00910 Genome accession   NZ_CP137761
Coordinates   160122..161240 (-) Length   372 a.a.
NCBI ID   WP_318506449.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 155122..166240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS00900 gyrB 157872..159794 (-) 1923 WP_318509283.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RGF10_RS00905 remB 159867..160112 (-) 246 WP_318506448.1 extracellular matrix regulator RemB -
  RGF10_RS00910 recF 160122..161240 (-) 1119 WP_318506449.1 DNA replication/repair protein RecF Machinery gene
  RGF10_RS00915 yaaA 161259..161468 (-) 210 WP_318506451.1 S4 domain-containing protein YaaA -
  RGF10_RS00920 dnaN 161647..162783 (-) 1137 WP_318506454.1 DNA polymerase III subunit beta -
  RGF10_RS00925 dnaA 163004..164350 (-) 1347 WP_318506455.1 chromosomal replication initiator protein DnaA -
  RGF10_RS00930 rpmH 165166..165300 (+) 135 WP_318506456.1 50S ribosomal protein L34 -
  RGF10_RS00935 rnpA 165472..165828 (+) 357 WP_318506458.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43004.62 Da        Isoelectric Point: 8.5820

>NTDB_id=900549 RGF10_RS00910 WP_318506449.1 160122..161240(-) (recF) [Bacillus sp. T3]
MYIEQLLLKNYRNYTDLEAQFENKVNVILGENAQGKTNVMESIYVLALAKSHRTSNDKELISWDKEYAKIEGRIKKQHGS
LPLQLIISKKGKKAKCNHIEQQKLSQYIGNMNVVMFAPEDLNLVKGSPQVRRRFIDMEIGQVSPVYLHDMGQFQKVLQQR
NHYLKLLQSKKQSDLTMLDILTEQFMVLAAKIVHKRFEFIQLLEKWAIPIHQGISRGLETLKMDYKPSVDVSEDFSLSKM
LEVYEQKYAKVKQKEIERGITLFGPHRDDLLFIVNERDVQTFGSQGQQRTTALSVKLAEIELIRSEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLKEAATYRVETGIMNRLQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=900549 RGF10_RS00910 WP_318506449.1 160122..161240(-) (recF) [Bacillus sp. T3]
ATGTATATCGAGCAATTGCTACTAAAAAATTATCGTAATTATACGGATCTTGAAGCTCAATTTGAAAATAAAGTAAATGT
TATCCTAGGCGAAAATGCCCAGGGAAAAACCAATGTCATGGAGTCCATCTATGTGCTGGCTTTAGCAAAATCACATCGCA
CATCAAATGATAAAGAACTTATATCATGGGACAAAGAATATGCTAAAATAGAAGGTAGGATCAAAAAACAGCACGGATCT
TTGCCACTCCAATTAATTATTTCAAAAAAGGGAAAAAAGGCAAAATGCAATCATATTGAGCAGCAAAAGCTAAGCCAATA
TATTGGAAATATGAATGTTGTCATGTTTGCGCCAGAGGACCTTAACCTTGTTAAAGGAAGCCCTCAAGTAAGACGGCGGT
TTATTGATATGGAGATTGGCCAGGTTTCACCAGTGTATTTACATGATATGGGGCAGTTTCAAAAAGTATTACAGCAGAGG
AATCACTATTTAAAGCTTTTGCAATCAAAGAAACAGTCAGATTTAACCATGCTAGATATTTTGACTGAACAGTTCATGGT
ACTTGCTGCAAAAATTGTTCATAAACGGTTCGAGTTTATTCAATTGCTGGAAAAATGGGCTATCCCGATTCATCAAGGTA
TTTCTAGAGGCTTAGAAACATTAAAAATGGATTATAAACCTTCAGTTGATGTATCAGAAGACTTTAGTTTGTCGAAAATG
TTAGAAGTATACGAACAAAAATATGCAAAAGTTAAACAAAAAGAAATTGAGCGGGGTATTACTTTGTTCGGTCCCCATCG
AGATGATCTACTGTTTATTGTTAACGAACGGGATGTTCAAACATTCGGTTCACAAGGACAACAAAGAACAACAGCCCTCT
CCGTTAAACTCGCTGAGATCGAATTAATTCGCTCTGAGATAGGCGAGTACCCTATTTTATTATTAGACGATGTTTTGAGT
GAGCTTGATGATTATCGTCAATCCCATCTGCTTAATACGATTCAAGGGAAGGTTCAAACGTTTGTTACTACCACAAGTGT
CGATGGAATTGACCATCAAACACTGAAAGAGGCTGCAACCTACCGTGTAGAAACTGGTATAATGAACCGACTTCAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

71.739

98.925

0.71