Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RGF10_RS00710 Genome accession   NZ_CP137761
Coordinates   121380..121664 (+) Length   94 a.a.
NCBI ID   WP_318506413.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 116380..126664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS00695 - 116519..117695 (-) 1177 Protein_117 ubiquitin-like domain-containing protein -
  RGF10_RS00700 - 117932..118699 (-) 768 WP_318506407.1 TatD family hydrolase -
  RGF10_RS00705 metG 118843..120810 (-) 1968 WP_318506410.1 methionine--tRNA ligase -
  RGF10_RS00710 abrB 121380..121664 (+) 285 WP_318506413.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RGF10_RS00715 rsmI 121707..122589 (-) 883 Protein_121 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RGF10_RS00720 - 122567..122851 (-) 285 WP_318506415.1 GIY-YIG nuclease family protein -
  RGF10_RS00725 - 122841..123581 (-) 741 WP_318506417.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RGF10_RS00730 yabA 123671..124045 (-) 375 WP_318506419.1 DNA replication initiation control protein YabA -
  RGF10_RS00735 - 124059..124886 (-) 828 WP_318506421.1 stage 0 sporulation family protein -
  RGF10_RS00740 holB 124879..125886 (-) 1008 WP_318509277.1 DNA polymerase III subunit delta' -
  RGF10_RS00745 tmk 125905..126543 (-) 639 WP_318509279.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10531.18 Da        Isoelectric Point: 4.9008

>NTDB_id=900547 RGF10_RS00710 WP_318506413.1 121380..121664(+) (abrB) [Bacillus sp. T3]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDDNVTLADGKLILSREGAE
QLVDEIKSAFNLNK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=900547 RGF10_RS00710 WP_318506413.1 121380..121664(+) (abrB) [Bacillus sp. T3]
ATGAAATCTACAGGTATTGTACGTAAGGTTGATGAGCTTGGTCGTGTTGTTATTCCAATCGAGCTAAGAAGAACACTTGG
AATTGCAGAGAAAGATGCACTTGAGATTTACGTTGACGACGAAAGAATTATTTTAAAAAAATATAAACCAAATATGACTT
GCCAAGTGACTGGTGAAGTATCAGATGATAACGTAACACTAGCTGACGGAAAATTAATCCTTAGCCGTGAAGGTGCAGAA
CAACTAGTTGACGAAATTAAATCTGCTTTTAATTTAAATAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.615

96.809

0.819