Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RGF10_RS00380 | Genome accession | NZ_CP137761 |
| Coordinates | 60866..63310 (-) | Length | 814 a.a. |
| NCBI ID | WP_318506338.1 | Uniprot ID | - |
| Organism | Bacillus sp. T3 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 55866..68310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGF10_RS00360 | ispF | 56745..57224 (-) | 480 | WP_318506334.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| RGF10_RS00365 | ispD | 57228..57921 (-) | 694 | Protein_69 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| RGF10_RS00370 | - | 57939..59023 (-) | 1085 | Protein_70 | PIN/TRAM domain-containing protein | - |
| RGF10_RS00375 | radA | 59323..60701 (-) | 1379 | Protein_71 | DNA repair protein RadA | - |
| RGF10_RS00380 | clpC | 60866..63310 (-) | 2445 | WP_318506338.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| RGF10_RS00385 | - | 63322..64395 (-) | 1074 | WP_318506340.1 | protein arginine kinase | - |
| RGF10_RS00390 | - | 64397..64945 (-) | 549 | WP_318506342.1 | UvrB/UvrC motif-containing protein | - |
| RGF10_RS00395 | - | 64967..65428 (-) | 462 | WP_318506344.1 | CtsR family transcriptional regulator | - |
| RGF10_RS00400 | - | 65663..66415 (-) | 753 | Protein_76 | SDR family oxidoreductase | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 90377.27 Da Isoelectric Point: 6.0797
>NTDB_id=900546 RGF10_RS00380 WP_318506338.1 60866..63310(-) (clpC) [Bacillus sp. T3]
MMFGRFTERAQKVLALAQEEAIRLSHNNIGTEHILLGLVREGEGIAAKALYALGLGAEKIQKEVENLIGRGQEASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAGGGQGGAAANANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIRVDEPTADESVQILKGLRDRYEAHHRVSISDEAIEAAVTLSDRYIPDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEVKLEEVRKEKDAAVQSQEFEKAASLRDSEQRLREQLEETKKTWKEKQGQENSEVTVEDIATVV
ANWTGIPVSKLAQTETDKLLRLEEILHSRVIGQEEAVIAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGAQALKRNKYVGFNIQDGAQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALERLHLK
QIVTLLADQLVKRLKEQHIELELTEAAKDKISDEGYDPEYGARPLRRAIQKHIEDRLSEELLKGTVLTGQNIVIDVENGE
LIVRTGQPAGIPKP
MMFGRFTERAQKVLALAQEEAIRLSHNNIGTEHILLGLVREGEGIAAKALYALGLGAEKIQKEVENLIGRGQEASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAGGGQGGAAANANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIRVDEPTADESVQILKGLRDRYEAHHRVSISDEAIEAAVTLSDRYIPDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEVKLEEVRKEKDAAVQSQEFEKAASLRDSEQRLREQLEETKKTWKEKQGQENSEVTVEDIATVV
ANWTGIPVSKLAQTETDKLLRLEEILHSRVIGQEEAVIAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGAQALKRNKYVGFNIQDGAQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALERLHLK
QIVTLLADQLVKRLKEQHIELELTEAAKDKISDEGYDPEYGARPLRRAIQKHIEDRLSEELLKGTVLTGQNIVIDVENGE
LIVRTGQPAGIPKP
Nucleotide
Download Length: 2445 bp
>NTDB_id=900546 RGF10_RS00380 WP_318506338.1 60866..63310(-) (clpC) [Bacillus sp. T3]
ATGATGTTTGGACGCTTTACAGAAAGAGCACAGAAGGTGTTGGCCCTAGCCCAGGAGGAAGCAATACGGTTAAGTCATAA
CAATATTGGTACAGAACACATTTTATTAGGACTTGTTCGAGAAGGAGAAGGGATTGCTGCTAAAGCGCTATATGCACTCG
GACTAGGTGCAGAAAAGATTCAGAAAGAAGTTGAGAACCTTATCGGCCGTGGACAAGAGGCATCCCAAACGATTCACTAT
ACTCCACGTGCTAAAAAGGTCATTGAATTATCAATGGACGAAGCTCGTAAATTAGGTCATTCCTATGTTGGAACTGAACA
CATTTTGCTCGGTTTAATCCGTGAGGGAGAAGGCGTTGCCGCACGTGTATTGAACAATCTAGGGGTAAGTCTTAATAAAG
CACGACAGCAAGTCCTTCAATTACTTGGAAGCAATGAAGCAGGCGGTGGGCAAGGTGGTGCTGCAGCTAATGCTAATACA
CCAACATTAGACAGTCTTGCTAGGGATTTAACTGCAATTGCAAGAGAAGGTAGTCTTGATCCAGTAATTGGTCGAAGCAA
AGAAATCCAGCGTGTTATCGAAGTCTTAAGCAGACGGACTAAAAATAATCCTGTATTAATTGGGGAACCTGGAGTAGGTA
AAACGGCTATAGCTGAAGGGTTAGCCCAACAAATTGTTAACAATGAAGTACCTGAGATTCTTCGCGATAAACGAGTTATG
ACATTGGATATGGGTACCGTTGTAGCTGGTACAAAGTATCGTGGTGAATTTGAAGATCGTCTAAAAAAGGTAATGGATGA
AATCCGTCAGGCAGGAAATATTATTTTATTTATCGATGAGCTTCATACATTAATAGGTGCAGGTGGGGCAGAGGGTGCAA
TCGATGCTTCTAACATCTTAAAACCTTCCTTAGCCCGTGGTGAATTACAGTGTATTGGTGCTACAACTCTTGATGAATAC
CGTAAATATATTGAAAAGGATGCAGCTTTAGAGCGTCGTTTCCAACCAATCCGTGTTGATGAACCAACTGCGGATGAGTC
GGTTCAAATATTAAAAGGTTTAAGGGATCGCTATGAAGCGCATCATCGCGTTTCAATCTCAGATGAAGCAATCGAGGCAG
CTGTTACCTTATCAGACAGATACATCCCAGATCGCTTTTTACCAGACAAGGCAATTGACTTAATTGATGAAGCAGGGTCT
AAGGTTCGCCTTCGTTCTTATACAACTCCTCCTAATTTAAAAGAATTAGAGGTTAAGTTAGAAGAGGTTCGTAAGGAAAA
GGATGCAGCTGTTCAAAGTCAAGAATTTGAAAAGGCTGCTTCGCTTCGAGATTCAGAGCAACGTTTGCGTGAGCAATTGG
AAGAAACGAAGAAAACTTGGAAAGAAAAGCAGGGTCAAGAAAATAGTGAAGTAACGGTAGAGGACATTGCAACCGTTGTT
GCGAACTGGACGGGAATTCCGGTTTCTAAATTAGCACAAACTGAAACAGATAAATTGTTACGCTTAGAAGAGATTCTACA
TTCCCGTGTTATCGGTCAAGAAGAGGCAGTTATTGCTGTTTCTAAAGCGGTAAGACGTGCACGAGCTGGTTTAAAGGATC
CAAAACGTCCGATTGGTTCATTTATTTTCCTTGGACCTACTGGTGTAGGAAAGACAGAGCTTGCCCGTGCTTTAGCAGAA
GCGATGTTTGGCGATGAGGATGCGATGATTCGGATTGATATGTCTGAGTACATGGAGAAGCATTCAACCTCAAGATTAGT
AGGTTCACCTCCTGGTTATGTAGGCTATGAAGAAGGCGGCCAATTGACAGAAAAGGTTCGTAGGAAGCCTTATTCTGTTA
TCCTACTAGATGAAATTGAAAAAGCGCATCCAGACGTTTTTAATATTTTATTACAGGTGCTTGAGGATGGTCGTTTAACT
GATTCAAAGGGGCGTACGGTGGATTTCCGTAATACGATCTTAATCATGACATCCAATGTTGGAGCTCAGGCTTTAAAGCG
TAATAAATATGTTGGTTTTAATATCCAGGATGGAGCTCAAGACTATAAAGATATGAAAGGGAAAGTGATGGAGGAATTGA
AAAAAGCGTTCCGTCCAGAATTCCTGAACAGAATTGATGAGATTATCGTATTCCATGCTCTTGAGAGACTACATTTGAAA
CAAATCGTGACATTACTTGCGGATCAATTAGTGAAACGATTAAAAGAACAGCATATCGAGTTAGAACTAACTGAGGCGGC
AAAAGATAAAATATCCGATGAGGGGTATGATCCAGAATACGGAGCTCGACCTTTACGTCGCGCAATTCAAAAGCATATCG
AGGATCGATTATCAGAAGAGTTATTAAAAGGTACAGTATTAACGGGACAAAATATCGTTATCGATGTGGAGAATGGTGAA
CTTATAGTTAGAACAGGACAACCTGCCGGAATACCAAAGCCTTAA
ATGATGTTTGGACGCTTTACAGAAAGAGCACAGAAGGTGTTGGCCCTAGCCCAGGAGGAAGCAATACGGTTAAGTCATAA
CAATATTGGTACAGAACACATTTTATTAGGACTTGTTCGAGAAGGAGAAGGGATTGCTGCTAAAGCGCTATATGCACTCG
GACTAGGTGCAGAAAAGATTCAGAAAGAAGTTGAGAACCTTATCGGCCGTGGACAAGAGGCATCCCAAACGATTCACTAT
ACTCCACGTGCTAAAAAGGTCATTGAATTATCAATGGACGAAGCTCGTAAATTAGGTCATTCCTATGTTGGAACTGAACA
CATTTTGCTCGGTTTAATCCGTGAGGGAGAAGGCGTTGCCGCACGTGTATTGAACAATCTAGGGGTAAGTCTTAATAAAG
CACGACAGCAAGTCCTTCAATTACTTGGAAGCAATGAAGCAGGCGGTGGGCAAGGTGGTGCTGCAGCTAATGCTAATACA
CCAACATTAGACAGTCTTGCTAGGGATTTAACTGCAATTGCAAGAGAAGGTAGTCTTGATCCAGTAATTGGTCGAAGCAA
AGAAATCCAGCGTGTTATCGAAGTCTTAAGCAGACGGACTAAAAATAATCCTGTATTAATTGGGGAACCTGGAGTAGGTA
AAACGGCTATAGCTGAAGGGTTAGCCCAACAAATTGTTAACAATGAAGTACCTGAGATTCTTCGCGATAAACGAGTTATG
ACATTGGATATGGGTACCGTTGTAGCTGGTACAAAGTATCGTGGTGAATTTGAAGATCGTCTAAAAAAGGTAATGGATGA
AATCCGTCAGGCAGGAAATATTATTTTATTTATCGATGAGCTTCATACATTAATAGGTGCAGGTGGGGCAGAGGGTGCAA
TCGATGCTTCTAACATCTTAAAACCTTCCTTAGCCCGTGGTGAATTACAGTGTATTGGTGCTACAACTCTTGATGAATAC
CGTAAATATATTGAAAAGGATGCAGCTTTAGAGCGTCGTTTCCAACCAATCCGTGTTGATGAACCAACTGCGGATGAGTC
GGTTCAAATATTAAAAGGTTTAAGGGATCGCTATGAAGCGCATCATCGCGTTTCAATCTCAGATGAAGCAATCGAGGCAG
CTGTTACCTTATCAGACAGATACATCCCAGATCGCTTTTTACCAGACAAGGCAATTGACTTAATTGATGAAGCAGGGTCT
AAGGTTCGCCTTCGTTCTTATACAACTCCTCCTAATTTAAAAGAATTAGAGGTTAAGTTAGAAGAGGTTCGTAAGGAAAA
GGATGCAGCTGTTCAAAGTCAAGAATTTGAAAAGGCTGCTTCGCTTCGAGATTCAGAGCAACGTTTGCGTGAGCAATTGG
AAGAAACGAAGAAAACTTGGAAAGAAAAGCAGGGTCAAGAAAATAGTGAAGTAACGGTAGAGGACATTGCAACCGTTGTT
GCGAACTGGACGGGAATTCCGGTTTCTAAATTAGCACAAACTGAAACAGATAAATTGTTACGCTTAGAAGAGATTCTACA
TTCCCGTGTTATCGGTCAAGAAGAGGCAGTTATTGCTGTTTCTAAAGCGGTAAGACGTGCACGAGCTGGTTTAAAGGATC
CAAAACGTCCGATTGGTTCATTTATTTTCCTTGGACCTACTGGTGTAGGAAAGACAGAGCTTGCCCGTGCTTTAGCAGAA
GCGATGTTTGGCGATGAGGATGCGATGATTCGGATTGATATGTCTGAGTACATGGAGAAGCATTCAACCTCAAGATTAGT
AGGTTCACCTCCTGGTTATGTAGGCTATGAAGAAGGCGGCCAATTGACAGAAAAGGTTCGTAGGAAGCCTTATTCTGTTA
TCCTACTAGATGAAATTGAAAAAGCGCATCCAGACGTTTTTAATATTTTATTACAGGTGCTTGAGGATGGTCGTTTAACT
GATTCAAAGGGGCGTACGGTGGATTTCCGTAATACGATCTTAATCATGACATCCAATGTTGGAGCTCAGGCTTTAAAGCG
TAATAAATATGTTGGTTTTAATATCCAGGATGGAGCTCAAGACTATAAAGATATGAAAGGGAAAGTGATGGAGGAATTGA
AAAAAGCGTTCCGTCCAGAATTCCTGAACAGAATTGATGAGATTATCGTATTCCATGCTCTTGAGAGACTACATTTGAAA
CAAATCGTGACATTACTTGCGGATCAATTAGTGAAACGATTAAAAGAACAGCATATCGAGTTAGAACTAACTGAGGCGGC
AAAAGATAAAATATCCGATGAGGGGTATGATCCAGAATACGGAGCTCGACCTTTACGTCGCGCAATTCAAAAGCATATCG
AGGATCGATTATCAGAAGAGTTATTAAAAGGTACAGTATTAACGGGACAAAATATCGTTATCGATGTGGAGAATGGTGAA
CTTATAGTTAGAACAGGACAACCTGCCGGAATACCAAAGCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
88.199 |
98.894 |
0.872 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.32 |
99.386 |
0.49 |
| clpC | Streptococcus thermophilus LMD-9 |
45.878 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.433 |
100 |
0.464 |
| clpC | Streptococcus pneumoniae Rx1 |
46.5 |
98.28 |
0.457 |
| clpC | Streptococcus pneumoniae D39 |
46.5 |
98.28 |
0.457 |
| clpC | Streptococcus mutans UA159 |
44.819 |
100 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.375 |
98.28 |
0.456 |
| clpE | Streptococcus mutans UA159 |
56.019 |
76.536 |
0.429 |
| clpE | Streptococcus pneumoniae TIGR4 |
55.717 |
76.29 |
0.425 |
| clpE | Streptococcus pneumoniae Rx1 |
55.305 |
76.413 |
0.423 |
| clpE | Streptococcus pneumoniae D39 |
55.305 |
76.413 |
0.423 |
| clpE | Streptococcus pneumoniae R6 |
55.305 |
76.413 |
0.423 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.769 |
79.853 |
0.421 |