NTDB

Overview

Name	uvrA	Type	Machinery gene
Locus tag	ABHM42_RS29525	Genome accession	NZ_CP156941
Coordinates	6296221..6299058 (+)	Length	945 a.a.
NCBI ID	WP_003093663.1	Uniprot ID	A0A0H2ZF88
Organism	Pseudomonas aeruginosa strain 2024CK-00455
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6291221..6304058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHM42_RS29500 (ABHM42_29495)	pchC	6291529..6292284 (+)	756	WP_023435682.1	pyochelin biosynthesis editing thioesterase PchC	-
ABHM42_RS29505 (ABHM42_29500)	pchB	6292284..6292589 (+)	306	WP_031285628.1	isochorismate lyase PchB	-
ABHM42_RS29510 (ABHM42_29505)	pchA	6292586..6294016 (+)	1431	WP_023435680.1	isochorismate synthase PchA	-
ABHM42_RS29515 (ABHM42_29510)	ssb	6294105..6294602 (-)	498	WP_003114685.1	single-stranded DNA-binding protein	Machinery gene
ABHM42_RS29520 (ABHM42_29515)	-	6294619..6296007 (-)	1389	WP_023435679.1	MFS transporter	-
ABHM42_RS29525 (ABHM42_29520)	uvrA	6296221..6299058 (+)	2838	WP_003093663.1	excinuclease ABC subunit UvrA	Machinery gene
ABHM42_RS29530 (ABHM42_29525)	bfr	6299130..6299594 (-)	465	WP_003093668.1	bacterioferritin	-
ABHM42_RS29535 (ABHM42_29530)	katA	6299725..6301173 (-)	1449	WP_003103909.1	catalase KatA	-
ABHM42_RS29540 (ABHM42_29535)	rplQ	6301454..6301843 (-)	390	WP_003093672.1	50S ribosomal protein L17	-
ABHM42_RS29545 (ABHM42_29540)	rpoA	6301887..6302888 (-)	1002	WP_003093675.1	DNA-directed RNA polymerase subunit alpha	-
ABHM42_RS29550 (ABHM42_29545)	rpsD	6302911..6303531 (-)	621	WP_003093678.1	30S ribosomal protein S4	-
ABHM42_RS29555 (ABHM42_29550)	rpsK	6303548..6303937 (-)	390	WP_003093689.1	30S ribosomal protein S11	-

Sequence

Protein

Download Length: 945 a.a. Molecular weight: 104489.13 Da Isoelectric Point: 6.6074

                                >NTDB_id=900503 ABHM42_RS29525 WP_003093663.1 6296221..6299058(+) (uvrA) [Pseudomonas aeruginosa strain 2024CK-00455]

MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS

PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG

EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED

EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM

LGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF

LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL

DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI

GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG

VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE

ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF

DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD

HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide

Download Length: 2838 bp

                                >NTDB_id=900503 ABHM42_RS29525 WP_003093663.1 6296221..6299058(+) (uvrA) [Pseudomonas aeruginosa strain 2024CK-00455]

GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT

CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG

TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG

CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA

CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC

AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC

GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA

CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC

AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC

GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA

GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACGCGCGCC

GGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG

CTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAGCACCAGAAGGTGGT

GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGCACCCCT

TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTC

CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCACGGCATGTGTGGGTCGGCGACCGGAC

GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCTTGACCGGCCGCCGTGGCG

AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAGTTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC

GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG

AGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC

TGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC

GGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT

GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGA

AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGG

GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGTTGAACGGCGCGACTAC

CCTGGAAGTGGCGCCGTATGATTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG

GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG

GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG

CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACAACCGCG

AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC

GACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC

GACCACCCTCTCGGGCGGCGAGGCGCAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGT

ACATCCTCGACGAACCGACCACCGGCCTGCACTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC

CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGA

GGGCGGCTCTAAGGGTGGCCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC

ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZF88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
uvrA	Streptococcus pneumoniae R6	57.233	100	0.574
uvrA	Streptococcus pneumoniae TIGR4	57.233	100	0.574
uvrA	Streptococcus pneumoniae D39	57.233	100	0.574

Detailed information NTG0900503